NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10146289

Scaffold Ga0326728_10146289


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10146289 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2584
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050107Metagenome145N
F066389Metagenome126N
F102366Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101462894F050107GAGGMAGLWFKPVCDDLLGKIHRWRVNYEHGEIFSTREWLDREGNKVDKPTRYAYRIPFRPLEIQHLVSILEALAPANSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAEQQKEQGKDLFEV
Ga0326728_101462896F066389AGGMPPTEDLNLSVGTEITATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDSRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPALAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDEPKPVIVPEEDLFEDRTW
Ga0326728_101462897F102366N/ATSDVARFEVTFTGNSDCFVARIDFPAHYGGGYQIFEGILGYKVSPSSLVMGKNRVTPRFPLRSTIPPQTAEDLREEERQLRMRLDYGETFNNDRVS
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