Scaffold Ga0326728_10061296

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10061296
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5207
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100612961	F093116	N/A	TMQPSRQITAAIRWMEQELPKSRMPMVASRLEEIIDAIKMNGRSIEWASGVITEFRETCPVAPKFWWQGGYQGQGRIPRDRIENGNEPIPVTTAMDVAHAQWIELFQKARRFADKESWKHCWQVPPEIRSFPTRPEAAAAARDFWMFYNRTREAKKLEFLQEGRDHRGKKVKTEQEAGIAAYLYAEEDIHSRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPIADGILGGPHTLDGLLDIARAAGVTRSHVPLTWESERVRDDYGDLNLDIVVEDTLVRMAGTTANWIGIVDLPDGQYRMEHGLVVTKDTTEVLPKEPAVALVAVNGFEQRLKDQRLQQEDRQRIEAELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGTSEPLGWISHEHLPVVKGELKGVLVSGGKYTLKVLCPLPEQGVRS
Ga0326728_100612963	F004817	AGGA	MPKTAAVVQLPEILRNKSSHLVKLAGKIDSFSLLLRETPEGELKRSIEDQFHTMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDLGTAPPPKRGKLCETCCFFAGISEEQVPEMTLIPAPQDLVLAV
Ga0326728_100612964	F003859	AGGAG	MDKPNAERMTTPARSWPGSNLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSREFQTLFNEVACKVQAYSTQSGDPLDTLKARLPALCALERLANPTPAVPGNKAGLTLGILIAILLGPIGIGGLIGLGTGMAHWIAHFFR
Ga0326728_100612965	F015428	AGGAGG	MTGILEMFALVEIGSGIGFLVRWRSKLLASKVNYFHPPHNRKSPFDKLVRAQIGSVITRQDRFCAKVADGLTVLIRRLVMLDAFRQLIRAMALPNSPLRRKLRNRKRTI
Ga0326728_100612967	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKANPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNALMVTFIVPIWCRLSNLERR
Ga0326728_100612968	F007120	AGGAGG	VKTLIIVLSVVCAVIAYYFGLRYFSGQDLGFTPARKYVRNLAKNLLHTEITAAREADATLNTTTEHAASN