Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10048346 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10048346 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6305
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6305

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F007120	Metagenome	357	Y
F093116	Metagenome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100483461	F093116	N/A	TMQPSRQITAAIRWMEQELPKSRMPMVASRLEEIIDAIKMNGRSIEWASGVITEFRETCPVAPKFWWQGGYQGQGRIPRDRIENGNEPIPVTTAMDVAHAQWIDLFQKARRFADKESWKHCWQVPPEIRSFPTRPEAATAARDFWMFYNRTREAKKTEFLQAGEDHRGKKVTTEQDAGIAAYLYAEEDIHSRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPIADGILGGPHTLDGLLDIARAAGVTRSHVPLTWESERVRADYGDLNLDIVVEDTLVCVAGTTANWIGIVDLPDGQYRMEHGLVVTPDTTEVLPQEPAVALVAVNGFEQRLKDQKLQQEDRQRIEAELKAFRAQVCNGVTIKPVTYRNPETEEDEAGAEVFLEGTSEPLGWISHEHLPVVKGELKGVLVSGGKYSLKVLCPLPEHGAHS
Ga0326728_100483463	F004817	GGA	MPKTTAVVQLPEILRKKSSHLVKLAGKIDSFSLLLCETPEGELKRSIECQFHIMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDLGSAPPPKRGRLCETCCFFAGIPEEQSFEMTVSPALVATTPLM
Ga0326728_100483465	F003859	AGGAG	MDKPNAEHTSPLGHSWPGASLYKSLKLGWRWRRLRWAIVAASEAAQGHEANGLPPGSREFQTLFNEVAAKVQAYSTESGDPLDTLKARLPAFCALERLANPAPTVPGTKAGLTLGILIAAVLGPIGIGALIGLGTGMAHWIAHLFA
Ga0326728_100483468	F002761	AGGAG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNALMVMFIVPIWCRLSNLERH
Ga0326728_100483469	F007120	AGGAGG	VKTLIIVLSVVCAVVAYYFGLRYFSRQDLGFTPAKKYVRNLAKNLFHTEIIAAREAGATPNATTEHAASL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10048346

Overview

Ecosystem & Geography

Associated Families

Sequences