Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10045353 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10045353 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6648
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6648

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005112	Metagenome / Metatranscriptome	411	Y
F016631	Metagenome	245	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100453531	F016631	GAGG	MNRLTNLALSAAETLLHEGGRLLFGIALGKAKVLLGTPQPLGTRQLALKRVLQNKAADGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENDPHSVDDFDGVIKEGYGKGEKRLIYSGTAVIKVDGSCQLGKINVHEHDGEKAGFHYDFVAEGVDPHTESFEVNIANGVLKGRYAFRQAFEKNRYLVVRLKDNSALVKKPDIHLKPEEFLKTISQSGRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGEPYYDKLPAIEDVSNHSCVWLARKLFPGPEQEGTVLRGELHHPDGAARVGGIVNALPDKAIQIQRERGHVEFYAWDIAKFKGRDVSHIPYGPRRELYESVIEEIRLFNRHFHLVPAMPEGGDPVKFYQTIVNDRRGLPYSEGEVVKYKDAVDEWFKVKANDTLDVRFIRCIVSVKPGASTQRDRGELGFTHAA
Ga0326728_100453534	F005112	AGGAG	MSLVAKYRLFWACCIATLWGLAFWKNSKSYPGKSRLWRLGKSVIDTGLVVLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAMFGLFAVDLLTGQVVARMDKRERNKLAQAA
Ga0326728_100453535	F039911	AGGAG	MTYTIAALLAVVGAIAGYFGIRHLMHKDLGFTPVKRYASKLASTLIHTETTAAQEAGVLPAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10045353

Overview

Ecosystem & Geography

Associated Families

Sequences