NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10043657

Scaffold Ga0326728_10043657


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10043657 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6853
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F004817Metagenome422Y
F007120Metagenome357Y
F015428Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1004365711F015428AGGAGGLTGILELFALVEMGSGIGFLLRWRNQLLASKVNYFRPPHNRKSPFDKLVRGKTGPVITRQDQLSVKLADGLTILVRRLVMLDAFRQLMRALALPHSPLRRRLRRQRRLS
Ga0326728_1004365712F003859AGGAGMDEPNAEKDTNLERTSTPGRSWPGVSLYKSLKHGWQWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTESGDPLDTLQARLPALCALERLAYPAPIVPRNKAGLTFGILIAAVLGPIGIGALIGLGAGMAHWITRLFG
Ga0326728_1004365713F004817N/ALVKLAGKIDSFSLLLRETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASAQLEPGDLGQAPPPKRGRLCEKCCFFAGIPEEQSFEMTVSAALQDLVFVI
Ga0326728_100436578F007120AGGAGGMKTLIIVLSAACAVVAYYFGLRYFSGRDLGFTPARKYVQSLAKNLLHTELTAAREAGTTPQATTEQAA
Ga0326728_100436579F002761AGGAGGMTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSNLESH
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