Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10028654 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10028654 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9616
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9616

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1002865410	F015428	AGGAGG	LTGILELFALAEMGGGIGFLLRWRNRLLASKVNYFRPPHNRKSPFDKLVRSRIGPIITRQDQLSVKLADGLTVLVRRLVMLDAFRQFMRALALPNSPLRRRLRGRRRLL
Ga0326728_1002865411	F003859	AGGAG	MDEQNAEKDTNLERSSTPGCSWPGASLYKSLKHGWHWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTKSGDPLDSLQARLPALCALERLAYPAPTVPRNKAGLTVGILIAAVLGPIGIGALIGLGAGMAHWITRLFG
Ga0326728_100286546	F005112	AGGAG	MSLVTRYRLFWAALMAALLGLAFWKNSRSYPRKSRPWRLGKAVIDTGLVVLMVIYSPALLLMYVVIWLTSPFKNKIIQVSAAFASILAITHLAGVVFEAVAVFGVFAVDLLSGQVVARMEKRERNKLARAA
Ga0326728_100286547	F007120	AGGAGG	MKNLIIVLSVVCAVVAYYFGLRYFSGRDLGFTPAKKYVRNLAKNLLHTELTAAREAGTTSAATTEQAA
Ga0326728_100286548	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGSLVNIFMVTFIVPIWCRLSNLESH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10028654

Overview

Ecosystem & Geography

Associated Families

Sequences