NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10024543

Scaffold Ga0326728_10024543


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10024543 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10910
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F011724Metagenome287Y
F042698Metagenome157Y
F100220Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002454310F011724GGAGMSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARMRAAFLARLIDPDTLALTADAANFLRALNRDGAIADLGDALQGDVTLQPSEYSLAGAHRQSFERQINEIKEGLYDALFSGLARHVEIEPLLGGTAGGETDRSTAFDRGEDKAFSKNQVF
Ga0326728_1002454311F008672N/AMWISYYQAGLSKQVVRQLLAIVNRDIQAALDFVSGVPSSYVPFAEYDLALLPVQQFPAILLTPDTVIFDEEANGTLHQTMRLSCVIAVTHQDRNTLAEMAQDYTRAVRAVLDTLWESTPGDFLLTNLPLPSPPFPNGVLSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAATMSIIVEVEET
Ga0326728_100245434F100220N/AMTIYKAPFEQFAVSLDFAADIGSGNRIASITAVTATSDLTRLDSTAEVIASNPAPAISGTGVVFTVKGGVLGERHTIAVQIVSSIGEQYQGDITLEVVE
Ga0326728_100245439F042698GGAGGMSIAVSSANQDLVVDNRGYLPALATLDVTGMTAATTNTVPHGLPRIPRRVWFTGIASGANAPACSLDTSSVAAGFDATNIYIFTPTGVTSVLVHVEY
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