Scaffold Ga0326728_10023403

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10023403
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11318
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100234031	F019075	AGGAGG	LRYFQPERALLTREILEERRRELDVVLSQLAQRRADRLPAPPPLSIEAQFQRTIINLREDVQRAKDVQTTHILRWLRS
Ga0326728_1002340311	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELAKFVGFKRSKPRESALRWINSHKVIALTATEIVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESRLS
Ga0326728_1002340312	F039911	AGGAG	MKYTIAVVLTVVAAVAGYFGIRRLTHKDLGFTPVKRYATKLAKTLLHTEATAAQEAGATPAA
Ga0326728_1002340314	F005112	AGGAG	MSLTVRYKLFWAACIATLCGLAFWKNSKSYPGKSRLWRLGKSAIDAGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGMVFEAVAVLGVFAVDLLTGQVVARMDKRERNRLAKAV
Ga0326728_100234032	F057060	AGGAGG	MPNHEELYFTPDIAKPHQKWSVLEDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHYAAKAGIEYSRISLGRQTDSFGLALALVQSGLGLEIPGDGTWYPVIPWVRDDGFCAVLMREPVPYEEVCHLFGFDIPAAKPSVPKRIKRHLARGRTALFGRQAEVRQLNQYDSVHRVILADGVTSFETAVYHPGPRWPEAWTSGAALTSRRGGALLTGHPVHIGDLIQITGALPTGQIKAHCLVWDVAYDLVVFDIKKELRAWNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQFLSQEFACDVFELMKDDERVKEEIGFYNPDGWVDEEGNLVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTVQPQELAGAGVRKYIFPEPFVFDRQGCPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGCRLHHFAEIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPDIVAHWKTLQDYPQVVATPTQAMVIDDGDTLFDRHPEVEPYDDEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRASILAQLRAMEPSPKVLEAIRWMELDLPRSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFEGQGRIPRHRLGNYNEPIPVTTAMDVAREEWVEIFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGTLGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVVVEDTLVRIVGSTPNPASWLGIVDVPDGQYRLEHGLSTEDDGEPAPQPATVALPAVNGFEQRLKDITLKQQDRQRIEAELKLFQSQIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKSEPLCWISREHLSGVTRELTGILVSNGKYSLKALCPLPQ
Ga0326728_100234034	F028392	AGGAGG	MAKTVAVVHLPEALRNGNSALVKLAGKVDSFSLVLWQTPESQLKRQIEKDYHAMVFTTRKEVRKYCPKYRYFAGEGILDFSTDCASGQFEPGDLGKPPQPKRGRLCHQCCFFLGEPEKRLTGTVASELQ
Ga0326728_100234036	F003859	AGGAG	MAELNAQKGTASESAGITVYLLPVASVCKTLKLGWQRHRLKCAVAAAAEAAQGHEANGVRPGSQEFKTLYDEVAKKVQEYSRESGDPIDTLKAKLPALCAIERLANPDPVVPQNRLGLTLGIIIAAILGSIGIGALIGLGAGMAHWIAHLFA
Ga0326728_100234037	F016632	AGGAGG	LTGILEVFALTEIASGIGFLASWRNKVLKAQVNFFRQPNDRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVTLIRKLVQYEAFRQVVRGLALAHSPIRQALSKKGGRPW
Ga0326728_100234038	F027079	AGGAGG	VIKSFLNLCLILFLDMLAYMVAIIAAAAVAWAAICGARWIFTVVQNAVVALWARQRKKGTCTHATR
Ga0326728_100234039	F025427	AGAAGG	MQPGELEKLLASFETCPIQKKGLFLRLFKLYWKKLLFIALMLILPGGLIVLFLCVTVWALNWEKEMTAYFDKAFRQWKKDNDVKCSFDGWLDEDGKERE