Scaffold Ga0326728_10021548

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10021548
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12096
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016427	Metagenome / Metatranscriptome	247	Y
F033370	Metagenome / Metatranscriptome	177	Y
F058763	Metagenome	134	Y
F063474	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1002154810	F016427	GGAGG	MIGRYLILTPVESGRDDRRFDKAWRRFAEICRSLHRDGLSYSVQLNLAGDNPHVVITASGTAKPRKHSASRALTLPPPVPAQRCRERAVEVEWFLPENSGRRNSNARYWGRRQERYQELAGMAEERLRAELEYWRELEALSGQREHFKPGRTDETAYADDEVRTDEVAA
Ga0326728_1002154812	F063474	GGA	MNMIVVFEDQATKRCQEGKPYAFASALEVRCMCGNLIHPFPGAWCTQCGLKVVEVRQR
Ga0326728_1002154814	F033370	N/A	MKSHTPECAKIEQFAATLVPMRSYHLCTQDFDTKDYTLEFHGRSIAITQQQFDDGTWQEVVKIAFQ
Ga0326728_100215489	F058763	AGGTGG	MIRWPDYREAVAWLKANAQGPTGFYLWGSIYVRRALWDGSSWRWLTDEEQQGAAR