Scaffold Ga0326728_10020324

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10020324
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12690
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1002032410	F016487	GGA	MISGNQTWTQALAQSQKQAYYVVEIPDFAIAIASFPTTAQVVTTQGGYGVTLYGVGGYGT
Ga0326728_1002032412	F007097	N/A	MSQLTLSAIPGFFDLADSALAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPAPIDPDDGYAYSRAECQFVSMIYSNRSPAPGFVPGQAAPPAQANSQSGQLYNYPGGWDVNDATGVITLRTTYWQNGTEVVTNDGIIKVYAVCLRLSLNSAN
Ga0326728_100203243	F042698	GGAGG	MAISVSSASPDILVDNRGCFPDLVTLSITGLTANATNAAPHGLPRVPKRVWFTGVGSGVNAAACSLDTSTVAAGFDGTNIYIYTPAGVSSVLAHVEY
Ga0326728_100203244	F011724	N/A	MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALFARAIDPDAMALTPDQANFLRALNRDGAIADLGDALQGNVSLQAGEESHAGERRKSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAFDRGENKAFSKDQTF
Ga0326728_100203245	F008672	AGGA	MWTSFYNAGLTKQVVRQLIAVINRDIQAALDFVSGVPGSYAPFVEYDLALFPVQQFPAILLTPDTVTFEEEADFTLHQTMRLSCVIALTHQDRNALAEITQDYVRSLRAVLDTLWESTPGDFLLTNLPLPSPPFPKGALSPGLASGKLTKLFADRHAFEEIRRSAQSGFVMAATMSIVVEIEET
Ga0326728_100203247	F010661	GAGG	MSKSNNIATAADFRQLAEAAAWAEAERVRLPKSGLGVILRRPTKFYWALRRSAWPRELREKLDLIGVGVKPELTPEETLQLLREDRQMLNEAFVDPKPSLDPGSAQFDPNWLPKEDAEFILKYLRGQVLANGQDLEIFPGSQPGLAEGSGGDGAPIRENAQRDSIARSGFVAS