Scaffold Ga0326728_10017756

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10017756
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14170
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F062368	Metagenome / Metatranscriptome	130	Y
F078112	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001775612	F062368	GGAGG	MAVSVSLTEQFIEETLAGPYIKNAKLTVTGLTTGANNNVPHGLTDGKGNAVTPITVSIEPSSNNNFYEYQAADSTNIYVGVGSGTGTTCNIYVEY
Ga0326728_1001775613	F011724	GGAGG	MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRSALYARGIDPDSMALTPDQANFLRALNRDGAIADLADALQGNVSLQAGEDAHASERRNSFERQVAEIKQGLYDKFFSLLARTVEIEPTLGGTAGGETDRSTGQDRGENKVFSKDQVF
Ga0326728_1001775614	F008672	AGGA	MWTSYYNAGLSKQVVRQLLAIIKRDIQAALDFASGAPGTYAPFAEYDLALLPVQQFPALLLTPDTVAVEEQANFTLHQTMRLACVITVTHQDRNALAELIQDYVRAVRAVLDSLWELTPGDFLLTSLPLPSPPFPQGALSPGLANGKLTRLFAERHTFEEIRRAAQSGFVMAASMSVVVEIEET
Ga0326728_1001775617	F010661	AGTAGG	MTDGNEIATAADFRKLAEESGFEEAKRVVLPVSGYAVLLRRPTKFYWALRRSGWPPELREKLDLVGVGVRTELTTEETLLLVREDRQMLCEAFVEPKPSLEPGATQFDPNWLPKEDADFIFRYLRGQVLANGQDLESFPRGQPGIIERSGGDGPNVRKDTK
Ga0326728_1001775620	F016487	N/A	MIQGNQTWTQALAQAQKQPYYMVEIPDFAIAIASFSSTANVVTTLGGYGVTLYGVGGYGT
Ga0326728_100177565	F078112	AGG	MTIYKSPYEQFGVSLDFSADIGPGNTLTSINAVTAINNLTQTDSTAEVIAAAPAPSISSSGTAVAFEVTGGVVGETHLISVRIVSSVGERYQGDVTLRVVE