Scaffold Ga0326728_10012716

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10012716
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18573
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F008540	Metagenome	331	Y
F015428	Metagenome	254	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1001271611	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNDLVHFVGFKKANPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSNLERR
Ga0326728_1001271612	F007120	AGGAGG	MKTLIIILSAACAVVAYYFGLRYFTGRDLGFTPARKYVRNLAANLLHTELTAAREAGATPETTTEQAA
Ga0326728_1001271613	F005112	AGGAG	MSLVTRYRLFWAALMAALLGLAFWKNSQSYPHKSPLWRLGKAVIDTGLVMLMVIYAPALLLMYVVIWLTSPFRNRIIQVTAAFASILAVTHLAGVVFEAVAVLGVFAVDLLTGQVLARMDKRERNKLATAA
Ga0326728_100127162	F008540	GGAGG	LRTYQPERALIARETREENRRELARVLDQISSERASRLPAPPPLSLEAQFQISIHKIREDVQRAKDAQTAHILRWLQS
Ga0326728_100127163	F057060	GGAGG	LNYQHLHFQFPAEPFQRWHVIEDRSVPRGLRFRHPRAPGEKPDPKLNFGVEELSARLEHAGVEYIRVALGNDAWSFELAHALLSNGMEGAGPGDGIWYPVIPWVRDDGFYAVCMRERMPYRDACRLFGFDIPAGKPSVPKRIKRDVARGRTSLFGELLETRELNQWDLLHTVMLADGKTTFEVATYNPGNRWPEAWTSGAALASPRGGAILTGHPVQVGDLIQITDAMPNGQIKANCLIWDIDHDLVVWDVKPELCAWQGQIYLSVLNELHGGPANLDVQTASNLDLAKVRDHKLIQFLCQQYACDVFDLMRDDDLVKEEIGFYNPAAWADEDGNPVINENRWKLWKMYSAGLPAMQFRTCRDAFYRTQMESPENNNPDRFRMRFREPQDLMTVQSNDLAGAAVRRYLFPEPFVFDKQGYPHWDRSTLPDVQSLYLGGFQGEFISLRNPNASHKESGMLRGRRLQHFAGIDRGAVMFVHLGFAASPEGTPGMAKSFNGADFDDSVLALLDPEIVKHWKALPAYPWAVATPTEVQVIDDGDALFERHPEVRPYDSFYVTCMLYDAKRGQTGIGYVVNAITWFNLLWFNRESIVAELRAMQSSPQVAEAILWMEEELPKSRMPMVASRLEEIIDAIKINGRSIDWASGIITEFRDTCPVALKFWWKGGYQGQGRIPRDRIENGNEPIPVTTAMDVAREQWIELFQKARRFADKESWKRCWRVPPEIRSFPTRPEAATAARDFWMFYNRTMEAKKTEFLQAGKDHRGKKVTTEQDASIAAYLYAEEDVHNRIKASGMYLDIYAELVKLVFDRGLTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRSHVPLTWDSAQVRADYGDLNLDIVVEDTLVRMAGSTSNPASWIGIVDLPDGQYRMEHGLVVTEDTIASRPQEPAVALVAVNGFEQRLKNERLQHEDRQRIEAELKAFRAQACNGVTIKPVTYRNPETEEDEAGAEVFLESAFEPLGWISQEHLAAVTGELKGVLVSGGQYSLKVLCPLPEQGAHD
Ga0326728_100127166	F004817	AGGA	MPKTTPVVQLPEILRNKSSHLVKLAGKIDSFSLLLRDTPEGELKRSIEEQFHAMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDLGKAPPPKRGRLCETCCFFAGIPEEQVPEMTVSPAPQDLVLVV
Ga0326728_100127168	F003859	AGGAG	MDEPNAEKHTSLECTSIPGRCWPGANLYKSLKLGWRWRQLRWAVVAASEAAQGHEANGLPPGSREFKTLFSEVASKVQEYSTESGDPLDTLKARLPALCALERLANPAPTVPRNKAGLTLGILVAALLGPIGIGALIGLGTGMAHWISHLFG
Ga0326728_100127169	F015428	AGGAGG	MTGILELFALVEVGSGIGFLATWRNRLLASKVNYFHLPHNKRSPFDKLVHVETGPVVTRQDRLCLKLADGLTALIRRLVMFDAFRQLIRALALPNSPLRRKLRSKRRPK