Scaffold Ga0326728_10008417

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10008417
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25666
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F042698	Metagenome	157	Y
F100220	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000841710	F007097	AGGAG	MSQLTLSAIPGFFDLDDSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRAPAPGFVPGQASPPGQSSSQPGSLYNFPGGWDVNDATGAVTLRTTYWQNGTEVVNNDGILKVYAVCLRLSLSSAN
Ga0326728_1000841713	F016487	N/A	LAQPQKQAYYTVEIPDFAIAIASFTASAEAATILSGYGVILYGIGLYGT
Ga0326728_1000841716	F010661	GAGG	MAKSNGIAKAGDFRKLAEASAFEEPSRVVLPKSGYGVVLRRPTKFYWALRRTGWPRELREKLDLVGVGVKPELTADETLLLVREDQQMLNEAFVDPKPCLNPGLTQFDPKWLPKEDAEFILKYLRGQVLANGQDLDAFRASEQGHPEGSGADGALVREDAERDVLSRGGALAH
Ga0326728_1000841718	F008672	N/A	MWTSYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGSPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEEANCTLHQTMRLTCVIAVTHQDRNTLTEMSQDYARAVRAVLDTLWESTPGDFLLTNLPLPSPPFPNGALSPGLASGKLMRIFAEGHTFEEIRRRPQSGFAMAATMSIIVEVEET
Ga0326728_1000841719	F011724	N/A	MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRGAFLARLIDPDTLALTADAANFLRALNRDGAIADLGDALQGDVTLQPGEYSLAGSHRQSFERQINEIKEGLYDALFSGLARHVEIEPLLGGTAGGETDRSTAFDRGEDKAFSKNQTF
Ga0326728_1000841720	F042698	GGAGG	MSIAVSSANQDLVVDNRGYLPALATLDVTGMTAAATNTVPHGLPRIPRRVWFTGIASGANAPACSLDTSSVAAGFDATNIYIFTPAGVTTVLVQVEY
Ga0326728_1000841725	F100220	GAG	MTVHKTPFDQFAVSVDFAADIGAGNSIASITAVTATSDLTRLDSTAEVIASNPAPAISGTGVVFTVRGGVVGERHTIAVQIVSSIGEQYQGDMTLEIVA
Ga0326728_100084176	F021037	AGGAGG	MFHLRAPSFYVAIAICLASCAWSSISEARIAQPLRAAQANPFTVEGKVNTLDQNKITLRAEENIIFHVRYDDKTEFKSDDGSPASSKDLRVGLRIRVEGDLTESGEIVAQRIELLKTPPK