NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10006511

Scaffold Ga0326728_10006511


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10006511 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31346
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049455Metagenome / Metatranscriptome146Y
F057933Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000651123F057933GAGGMLELPLRQVATLLLESAIRIAPPDTREWGEAMRGELSYVDGQWAGLMWAFGGAGMMVKYALISIFIPGRGQGIPPGDELFAKSVSLGKTALVGGAGCILAALLFFGAPPFRQAFRVALRPWYFMFQIASGDPQHGFEALAKRAQSQHDPEGLAFCAVRIENSRESARLAEEAVRLNPNLLWVYAVVGMRYPELPQIGPWMARLEQWDAQNSLFHLIEAQSVDLAHFGPGARTPPSREQDEAWRTAMSAVFRSPRFDDYLDRVAELNRKVIPRYGFYDPYEVESRDQLDLPVTAFDNSERFAKSLLRTGEDLEARGDRKGALEKYWTVAHFGQVIDSQGRTGFEHLIGTSLQAMAYKQLQAFSVKGGNQADAALFAYLAAKFDPLSGEHPGFPGESAFGLDTAKRNAAVVQISGLMILVFSGLLVIAAAILLIGGSASRRTPSAAQRAKPVATLILSSSAVGLLFSSVTLYLTYRPYWYIFQSAVLNGGRSQARDLIYFLNETKLPAGVSPRAYLLLHSLVYSGSPNFLFYVWTGVTLLGLIGLALILLRHFLSRPRVNRLQNHPRVP
Ga0326728_100065114F049455GGAGGMVIIVIVGGLLAGAGIFAALKNTSKARESKVTKLNIG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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