Scaffold Ga0326728_10005441

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10005441
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35723
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F041893	Metagenome / Metatranscriptome	159	Y
F086059	Metagenome	111	Y
F105660	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100054411	F105660	N/A	VASSFFSVPVNFISLDDLATNKQALGRSSDLKDLKQNPKSTHSDK
Ga0326728_100054412	F000208	GAGG	MKIRVTTRAGLFEERKHQHVERGYRTEDERPIPANGLCSFIVVRFEPASDEVGELVAQALNGRRGLRGGY
Ga0326728_1000544123	F041893	GGA	MDKKTGVRRGTRIPCEIPITLTSAGPAHSFSEPCLIILVNPQGCAGRCGRPLEVGATVRLEGLPASTDITASVVNCISMGEYERLWLLGLALDQPGNVWGIQSPPEDWAL
Ga0326728_1000544134	F086059	N/A	VLIRYAVRNRGGHVYDVTTPQVYELAGARYPQSLYILVNSQLGDREAARLTVRQQTPVTVLEGRVQSSHLAPGQETIGVVALHLPPSTDPTVLRFEFANDDREQVTAFLVR