Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10005425 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10005425 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35826
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (86.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35826

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (86.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016631	Metagenome	245	Y
F019075	Metagenome	231	Y
F039911	Metagenome / Metatranscriptome	162	Y
F104296	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000542510	F039911	AGGAG	MKYTIAVLLAVVAAVAGYFGIRRLTHKDLGFTPVKRYATKLAKTLLHTEATAAQEAGVA
Ga0326728_1000542513	F104296	AGGAGG	MPNHEELYFTPQVNKPHQKRSVLEDPERPGCRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHHAAKAGIEYSRISLGRQSDQ
Ga0326728_1000542514	F019075	AGGAGG	LRYFQPERALIAREFREERRRELNGMLSQLPQRRADRLPAPLPLSLEVQFQRTIVNLREDVQRAKDVQTTHILRWLRS
Ga0326728_100054255	F016631	GAGG	MNRLANLALSVGETLVHEAARLLFGIALGRAKERLGTPQQLGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTDQQPRTLAVENDPHSVDDFDGVIEEGYGKGEKRLIYSGTGVIKVGGSCQLGKINVHEHDAEKAGFHYDFVAEGVDPHTESFQVNIANGVLKGRYAFREAFENNRYLVVRMKDDPVLVAKPDIHLKPPEFLKTLSDSTRPVSVEWKDDGSLANVAIHNLRAVYRSHRLEGEPYYDKLPAIEDVSNHSPVWLARKLFPGPEQEGTVLRGELHHPDGAARVGGIVNALPEKSNQIQRERGRVEFYAWDIAKFKGRDVSQMPYGRRRQLYEGVIEEIRLFNKHFRVVPAMPDAGRQGQNLHLPPIAWGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10005425

Overview

Ecosystem & Geography

Associated Families

Sequences