Scaffold Ga0326728_10003124

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10003124
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52661
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (91.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F062368	Metagenome / Metatranscriptome	130	Y
F078112	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000312416	F078112	N/A	MTLYKTPFEQYTVSIDFTADVGAGNTVASISAVTAVSNLTGLDSTAEVIANPPAPTISNSGTAVVFGVTGGVVGETHTISVQVVSSLGEKYQGDITLRVVE
Ga0326728_1000312423	F062368	GGAGG	MAVSVSLTEQFIEETVAGPYIKNAKLTVTGLTVSGNNTVPHSLTDGKGNAVTPLTVSIEPTSNNNFYEYQAADSTNIYVGVGSGAGTTCNIYVEY
Ga0326728_1000312424	F011724	AGGAG	MSYCTVDDVCTAFPRFVRNAPNSIQDTQIQDWIDDRKARIRSALYARAIDPDSMALTPDQANFLRALNRDGAIADLGDALQGNISLQAGEESHAGERRKSFERQISEIKQGLYDKFFSLLAKTVEIQPTLGGTAGGETDRSTAFDRGENKAFSKDQVF
Ga0326728_1000312426	F008672	AGG	MWTSYYNAGLSKQVVRQLIAVINRDIQAALNFVSGVPGSYAPFVEYDLALLPVQQFPALLLTPDTVSFDAEANLTLHQTIRLTCVLALTHQDRNTLAEITQDYARGVRAVLDTLWESTPGDFLLTNLALPSPPFPRGALSPGLANGKLMKLFADRHTFEEIRAAAKSGFVMAASMSVIVEIEET
Ga0326728_1000312429	F010661	AGG	MTKMNNIATAGQFRKFAEESAFEEPRRVVLPRSGYAVVLRRPTKFYWALRRSAWPRELREKLDLVGVGVRPELTPEEMLLLVREDRQMLEEAFVEPKPCLDPGSTQFDPNWLPKEDAEFILKYLRGQVLANGQDLESFPGSEPGHAARSGSHGSLVREDAERNVAPTGGSVAS
Ga0326728_1000312432	F016487	GAG	MIQGNQTWAQALAQPQKQAYYTVEIPDFAIAIASFPSNANVVTTLGGYGVTLYGVGGYGT
Ga0326728_1000312434	F007097	GGA	MSQLTLSVIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWTIYSNRAPAPGFVPGQAAPPAQANSQSGQLYNYPGAWDVNDATGAISLRTTYWQNGSEVVTNDGIIKVYAVCLRLSLNSGN
Ga0326728_1000312436	F021037	GGAGG	MVRHLRYTWDEVKTMFRLRAPALCLPVMLFLLSCGWIFCSEAQVAVSLHAGQAMNFTLEGKINTLDHNKLTVHTEENIIFHVTYDDKTEFKSDDGSPASGKDLRVGMRIKVDGDLTESGEILAQKIEVEKKK