Scaffold Ga0326728_10002414

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10002414
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62320
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (87.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005112	Metagenome / Metatranscriptome	411	Y
F016631	Metagenome	245	Y
F101012	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000241410	F005112	AGGAG	MSLVAKYKLFWAASIATLCGLAFWKNSKSYPQKSKLWRLGKAVIDTGLVPLMVLYASALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAAAVFGVFAVDLLTGKVVARMDKRERNRLAKAA
Ga0326728_1000241412	F101012	AGGAGG	VRGVQRAKDVQTAHILRWINAHNVVTITLTEAENYSVHGISSPLGVTFALGGTLVNLLMVTFIVPLWCRLSKLESWL
Ga0326728_100024148	F016631	GAGG	MNPLVKLALSVGETLVHEAGRLLFGIALGRAKVLLGTPQPLGTRQLALNRALQKKAVDGALLAGPRTGKEYAKFTLKKGLPTEQRPHSLAVENQPHSVDDFNGVIEEGYGKGEKRLLYVGTGVVKVGNSSRLGRINVHEHGAEKAGLHYDFVAEGVDPHTQFFEVNIANGALKGRYAFRQAFGENQYLVVRLKDNSVLVAKPDIHLKPPEFLNTIRQSDRPVSVEWKDDGSLANVAIHNLRAIYRSHRPEGEPYYDKLPAIEDLRNHSPVLLARWLFPGSEQEGTVLRGELHHPDGATRASPSRDC