Scaffold Ga0326728_10002364

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10002364
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63135
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (73.85%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F062368	Metagenome / Metatranscriptome	130	Y
F083583	Metagenome	112	Y
F100220	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000236410	F021037	AGGAGG	MFRLRAPFFYVPLVIYLASCACSFSSEAQATETWRAGQAENFTVEGKINTLGQNKLTLRAEENIIFHVSYDDKTEFKSDDGSPAGSKDLRVGLRIKVEGDLTESGEIVARRIELEKTPPP
Ga0326728_1000236413	F007097	GAG	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGAVRSKLIFMGFYANGNTVPTPIDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQAAPPAQSSSQPGALYNFPSGWDVNDATGFVTLRTTYWQNGNEIVNNDGIMKVYAVCLRLSLNSAN
Ga0326728_1000236417	F016487	GGA	MIQGNQTWTQALAQTRKQAYYVVEIPDFAIAIASFPASSVAAQTAISGGYGVTLYGVGGYGT
Ga0326728_1000236422	F010661	N/A	MTRWLDGRFTMTKTNHIATPADFRKLAEDSAFEEPRRVALPKSGYGVLLRRPTKFYWALRRSAWPRELREKLDLVAVGVRPELTAEETLLLVREDQQMLNEAFVDPKPSLNPDGMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPRGQSGHPEGSSADGALVRKDSE
Ga0326728_1000236424	F008672	N/A	MWVSYHNAGLTKQVVRQLLAVISRDIQAALDFVSGVPGSYPPFAEYDLALLPVQHFPAILLTPDTVTFDEEANSTLHQTMRLTCAIALTHQDRNTLAEMAQDYVRAVRAVLDTLWESAPGDFLLTTLPLPSPPFPNGALSPGLASGKLMKLFADGHTFEEIRRSPQSGFAMAASMSIVVEIEEV
Ga0326728_1000236426	F011724	N/A	MSYCTVDDVCAAFPRFVRNAANSIQDTQIQDWIDDRKSRIRSAFFARKIDPDAMTLTSDQANFLRALNRDGAIADLGDALQGNIALQPGEYSLAGARRKSFELQIKEIKEGLYDKLFSAIARTVEIEPTLGGIAGGETDRSTAFDRGEDKAFSKNQTF
Ga0326728_1000236427	F062368	AGGAGG	MSVSVSTTEQFIEVTVAGPYIKNAKLVVTGLTTGGNNTVPHGLTDGKGNAVTPLTVSLEPTSNNNFYEYQAADSTNIYIGAGSGSGTSCNIYVEC
Ga0326728_1000236430	F083583	AGGAG	MSDITAIDQSYHLNYNIEVGKFTCLAPDTTVYADGCGVPSGANGQFLGVAQESILPDAMADYSSGQYTLASGTAWPTGAIPASGLGRNIRTRLLGISRAVASGAITRGAYVNIANAQGQVKAVSESGTMINVVGVAIDAATNPGDVIRVLVMPYTYKG
Ga0326728_1000236434	F100220	GAGG	LTIYKAPYEQFAVSLDFAADLGAGNSIASITAVAATSSLSQLDSTQEVIASNPAPAVSGTAVTFVLAGSSPNGPSGGVVGERHTIAVQIVSSIGEKYQGDVTLEIVE
Ga0326728_1000236455	F003490	GGGGG	MSIFVALFVVLGLVTILFLGLVFYRSRIAKRDTDWIPLSNDAREDKAIEAQKVNEAKIHKLDLPVRVLGILWVIMVVVIIGFWFYHGIMTPPPITR