Scaffold Ga0326728_10001960

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001960
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70372
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (67.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000196061	F048047	AGGAG	VTIENRQSTIGNSDNGIAKASDFRAALERANIERVVLPASGLPVLLCRPPVFAALAMGRAGTLLQARITDAKPEEIKTEDIEAFTQWLTETLARLFVQPRFSAAPEALEIGLADLLIEDLKFIFRWLRGEVFSEKLEARSEKLEGNHSSSSLLTPSSSTEDLGRFPGGQGAASVPGGSGEAQPLPSERARGAHGDAGLPAGLHRG
Ga0326728_1000196064	F022798	AGGA	MSYTTVTQVTGMFPTFTRNGPKGPSDTLIQNYIDDVAGEIDAILQRRFQEAYASLGFTAWQGSFSTDQLNLLEKINRYGASAQLAEVFETCGIAAAARVAKSFEDEFHTLCNKLNARDADGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGGDQYPSETSNEDSTNVFKKWDRREF
Ga0326728_1000196065	F019267	GGAGG	MSASATYTTLFTFRLDRRQLVRRIRVDITGLASGANTIPHGIVAPNNQSVGQTPKEELTLLTSNVAVHRTQPADSTNLYYTVDSGSGTTISVYVTV