Scaffold Ga0326728_10001643

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001643
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78147
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (83.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F001473	Metagenome / Metatranscriptome	688	Y
F001559	Metagenome / Metatranscriptome	671	Y
F001949	Metagenome / Metatranscriptome	613	Y
F005822	Metagenome / Metatranscriptome	389	Y
F014867	Metagenome	259	Y
F017652	Metagenome / Metatranscriptome	239	Y
F035109	Metagenome / Metatranscriptome	173	N
F061081	Metagenome / Metatranscriptome	132	N
F098450	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000164322	F000586	N/A	MNHADPDTMRARARQAIELLETQLVDTGTVQPLVALYFDDHIEQVQFEDPSVLDNFDIRTARSFDYLRTLVGIKAPQAAIMALDVRMGPFENDEREVVPEKTVIFLMLDSPLLTIQVILPYTRSGGTIAVSRVHYTEMPGADETAPCQIFKLFRNAPSSVS
Ga0326728_1000164323	F017652	GGAGG	VKPRKEFDCVEMKAEIQERLLHEVAELGEEEAQRRRAERLSRDPILGDFLRTKMANGKGSAERTPAA
Ga0326728_1000164332	F001559	GGAG	MNEMMCGESVGPVAVRKWIGDVSAERVGQLWRAEDHEALLRTMHAADELTLALVALARRESLETGVNDKERTDGHGVRSKTEPVGIDIHAGGA
Ga0326728_1000164336	F035109	AGGAGG	MQTHQSAAFTANPILTLEDLGLERTVSLDEASRGLAERSEAQIVRWVQFPAGALFFVLAQGDPSSGAVYIFDRRSGVFYFVVFNDRNWGGYSVAEYEALERTHRISRLAQRPWLLNRKCESGKTH
Ga0326728_100016434	F001949	GGAG	VSYFNFEFNPEMPTSLVHCLNRRYKGARRFPVTAPDAQGTLIVWARDLQECQEHLLNALFDLLFARKRVGASVCNPPCIYCGEKTQSRGRNSSGTRGWRCVSPVCKRSFVIDRSFPGGINHPTQSKKPDFHRLVFVEGKTIREACDALGLSMRACDNWFRKMVALGQPMDHRCPCGRALRHRGSCQFRQTYHIVRKEANGKPQTAERSSNNRVRAGEVAAD
Ga0326728_1000164347	F001473	GGAG	MQPQYQTASQMYERLMTMIRQRNDTGFRLAVSDAVLQPRNPFKPADRRRLKPTVAFAISVFAALALVFLYFSFRHKG
Ga0326728_1000164350	F005822	AGGAG	MKSSEQTMAITGAESIADSKSTEPPAGEGKRARSVRDSKAFLPRGTMTTRRRSRQENSETAGEERFFLASGSGNGGVPALGRECGSEAEAIIDAFRERVNFYTVAEFQTRADVGPSGEPILRKAGLKKTNPAS
Ga0326728_1000164351	F014867	GAGG	MRSLFPYSYDRAAVLMSAGCSTFASAALILVIPRFGILLLEFLLGLFFIGYALVVRKRLRRQAQAKDGSNEAKNTKMRRLDRYDVFMVLAMIAVQTGAAGPLRKAGLSEGTVGILPLFLLATGILLKPRAVAFIESRRKEKLARGHGAATKRGDLE
Ga0326728_1000164361	F098450	N/A	MWLVLRGSAAKVPSWVQRACRASMAFLVYSGTLYLLKWNPFWKLMPPMDFKSRNQAEGFLLLISTLVWFIATLRILLRGLGFRSLQAGSGGPENRAAQEGKIRRGLSLTDLILFYLFLRG
Ga0326728_100016439	F061081	GGAG	MSTVPTGLPYPAAGTPAQYLRAQECGHEGAARTRAPWLIAPGYSLSVPRLDHVGLRHSSFGSDAGAARFATILIELGIGSPSDWTACGREPAKFLGRTLDRFVKSQAEFAIDGAFELSLTLSTDPHEWCETEDEPDGSQMFIYMEAASCGFVNLGPALTICEEENPRLPVTFARLFLHGLGWLFRVYDDRDAEEHLSFLEDYYDPEEDREALAAVPDRNNILPPCMNKRPLGRRALKATLARMAPRNRVLRLLKATLELDRISRRVRFPEVPEPVRERFCDCNPAVPILLAIYRQGDAIEACFDDERRSMLEQTPEPWPLIPFDGTDPASTKRAFSCLSGALQALAAARRVLDLVPGWEPIRRERQ