Scaffold Ga0326728_10001556

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001556
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80708
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (69.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002138	Metagenome / Metatranscriptome	590	Y
F006028	Metagenome / Metatranscriptome	383	Y
F069189	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000155642	F069189	GGA	MPEYNFQLRGWHAVLAIVALIGYGGIQMWMRVRPVEDGMRDAVRERLLNEYSGRGPNDVARLLAEARGGSPVEPLPELVQRDVEFTSIAAHGRMGGPVTLVRVEVTVDGAPPPDGRAIRYFSVSRKFEGGGWMVVGQTDSYLYYRELFP
Ga0326728_1000155655	F006028	GGAGG	MSEPDVLDRILETCSYRFRNVICPNKDKVANITAAKFHAEDADWSVVECSLLPNGEVKCAMSCLLRDFDKTE
Ga0326728_1000155665	F002138	N/A	VNLRQFLSENFAGDLEYHPRRAAIYLLLGAASACFWYFSPATSKFTVTPLVFLLGAITLVTKGVFLLRKSSEGLGLTESDWQALSDPANRKPLPELPEQFAQVVQDFGAGSLLLWPLLNLAGDIDRSWINPPKFKVFVTGAVLFFFGWLIRKLAVRRDSST