Scaffold Ga0326728_10001515

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001515
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81417
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (81.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001260	Metagenome / Metatranscriptome	735	Y
F022135	Metagenome / Metatranscriptome	215	Y
F025901	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000151546	F025901	AGGAG	MKLRTIGILITLCMVMAGTATAQEGPIVAGTGRYGDASGTAPKYKNLLYGVIKTIDAHGMVLEKTKAGIDQTFKFQPKTKFIHDNKPSSREDLKVGEQVYVEARQDKKTGDLYAKQVISGIVVPLE
Ga0326728_1000151549	F022135	GGA	LLPLCLPVFATDKKDLAERYKGKYLVVLQEGLAVGMCADLPAVPSGIALDVRITGDSVDLSPQAGAGAGMTGCGEIIPEPLHKGEIIFAKFTWFRRLKGGFFTITVQTVSPHQVKRSEGASRHEHLKYGKADLIFETSDTKDYDAVAALVEKWVRPFDTRAEAAQFGNTASGVYVKEVKLGMSFAEVEAALGPPQTRADLGDKVLYKYKDMTVEFHDGKVTDVK
Ga0326728_1000151574	F001260	AGGA	MASWKVIALVNGDIEAVSGPAAQGRPGAHEWMVWQGAAADKAEALQSAEKGDPRVDLEWMRIRYEKDLNKR