Scaffold Ga0326728_10001188

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001188
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93589
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (86.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000118845	F017431	GGGGG	MAKTKSKVECELDRTEILRYLNECGLQPVTPRSIMVYLDDCLRPVSLEAIQFHLRYLQDRKWVELCIEKRVGEPAAVLWARINADGVDEYDRRAQLLGGPR
Ga0326728_1000118853	F023263	AGGAGG	MLGNQGLTAAKFDTNIRAVRGTVMGLPVTNLSTESDFYVGLPTALNAVPTGVLAQDVVEPGYPMTSELWLDPTTGNPINGSTPPAPFISQGRAWGLITFAPEAEVIAADTTIQAEDDVVIADAYGRVTSIRNIATGNTAYVVGKAKYPPTAANQKIRIQVSLRQVKV
Ga0326728_1000118856	F019267	GGAGG	MAASATYTTLYSFREDRRRLYRRIRVDIAGLVSGANTVAHGITKREAPTQGASPIEEQALLTSNVAVHRTQAADSTNLYYTVDSGSGTTVSVFVTV
Ga0326728_1000118857	F022798	GAGG	MAYTTVDNVAGMFPALTRNGPKGPSDALIQAFINDVAAEIDAVLQRRFQEAYASQGFAVWQGTLGQDQLNVLEKINRYGACAQLADVFDTAGITAAARVAKGFEDKFRDACNRLNARDANGKPLSQGGDYDYLFDPLAKVETPRPQMGGVAGGDQYPNQTPSEGVQVDFKKWDRREF
Ga0326728_1000118863	F040975	GGA	MISGNQTWQQGLNAPQKQALYVLQIPQFGIVLASFTPTQILDLSQSGWGVTLWGIAGWGT