Scaffold Ga0326728_10001056

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001056
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100403
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001116	Metagenome / Metatranscriptome	773	Y
F077204	Metagenome / Metatranscriptome	117	Y
F079496	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000105616	F077204	AGGAGG	MDSPHNIESAKLRMLEARRALEDHEKLKGYVSSSEHSKLILVFNKATKAYLWLTASQR
Ga0326728_1000105681	F001116	GAG	MTFLKTRFKLEKELTPKELEHLSRLSTVYGIRGLSFEGQDLIVEYDASRIHEAEVLAEVRGVGIPADPLQPIPLGGFDHTGEFHDFAWPTQGLSPVNQKAK
Ga0326728_1000105683	F079496	AGGAG	MAKKTGLPKTAEKVDPGVAATLAGIIYQAQLFNRQAKVNVPEEEVVVEVISLWRIVMDAMSSGSVPGISA