NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000765

Scaffold Ga0326728_10000765


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000765 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121928
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (60.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005085Metagenome / Metatranscriptome412Y
F034666Metagenome / Metatranscriptome174Y
F052072Metagenome / Metatranscriptome143Y
F062016Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000076535F034666AGGAMSADKPSPEKQVQPVAAGLLYRLTVAFPSWAGAILAVYSIFLCRFSALKIRLR
Ga0326728_1000076559F052072GGAGMKTILKFATLTLMMFAFSVYGFSKTSTAENLVRGVIGPVTSNTSWSGYSVLSLIPGAGLIPVTSTTTVFYLGFTAGTEADVSNMVLYTTARGSSTITAVTPVKLGGVSNPTIDLASTKVCPVVEISDFNPCIVRLDPTTITLSALNDYYLVVYFTASDSNNSAIGLTQPSFAQSSLRGTYQSGDDSQLTVGGSIPSTLSFANQPDGLMYVMTN
Ga0326728_1000076560F062016GGAGMKTFYELATLTLMMTVLAASALAQEQAPATTLVNLTEGQGTIASSGNQSWDGLSEFVLIPGAALMGASSSSTALYLGFTGGSEADIGNMVLYEVPRNGSTVLKVEKVTLGGTSSPSINLTSTSVCPVQPVSVTNPCIVRLDTVKLALSPLDDFYFTIYFTLDTNNEKISGVGQTALPGALSGWYLYGDQTRIGVKGALPTNENNDYAPYFLAYITNE
Ga0326728_1000076578F005085GGAGGMERQFDSAPEADVSREDLTSVMTALEPDQLISAKEHHHCPRRKLTRTEMILFWGLRIYLVFMVGVVVYQIWTGVR
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