Scaffold Ga0326728_10000724

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000724
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125302
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (69.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000400	Metagenome / Metatranscriptome	1181	Y
F004505	Metagenome / Metatranscriptome	435	Y
F026584	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000072436	F004505	AGGAGG	MSQGTPGPQINVSKIVAGGGIAGAIFTASSMLIFLIGIPALRYFLPAAIVLGCGVAAIIHFIRHETPGKSWILAATKK
Ga0326728_1000072451	F000400	GGAGG	MRDPEIIEAELIEISAIADDSIKFERIVAWCASHPDEVPFALHQFMGRRNKHPSKPAET
Ga0326728_1000072484	F026584	GAGG	MPHVETSAKQPRRSGQRSRKKSGGSAETRCTVGLAPSLANKVERYARTVDSSMSKAIAALVRLGLDGHEARKREFFEKLKDNLANDDPNQQDRLVDEFRTLILGR