Scaffold Ga0326728_10000680

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000680
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129661
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (83.93%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003490	Metagenome / Metatranscriptome	483	Y
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F014351	Metagenome / Metatranscriptome	263	Y
F016487	Metagenome	246	Y
F021037	Metagenome / Metatranscriptome	220	Y
F057832	Metagenome	135	Y
F062368	Metagenome / Metatranscriptome	130	Y
F078112	Metagenome	116	Y
F083583	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000068029	F021037	GAGG	MFRLRAVSLYVPVMILLACLAWSSFSEEPIAKSLPTDQATNFTLDGKINSLDHNKLTVHTEENIIFHVSYDDKTEFKSDDGSPASSKDLRVGLKIHVEGDLTESGEIVAQKIVLEKAKK
Ga0326728_1000068031	F007097	N/A	MSQLTLSTIPGFFDIADSAIAASQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGSTVPTPVDPDDGYTYSRAECQFISVIYSNRSPAPGFVPGQAAPPAQANSQPGQLYNYPGGWDINDATGVVTLRTTYWQNGTEVVTNDGIIKVYAICLRLSLNSAN
Ga0326728_1000068033	F016487	N/A	MIQGNQIWTQALAQAQKQAYYVVEIPDFAIAIASFPTTAQVVTTLGGYGVTLYGVGAYGT
Ga0326728_1000068036	F010661	AGG	MTETNHIATAADFRRLAEDSAFEEPRRVLLPKSGYGVLLRRPTKFYWALRRSGWPRELREKLDLVGVGVRPELTAEETLLLVREDRQMLNEAFVDPKPSLEPGTTQFDPTWLPKEDTEFIMKYLRGQVLANGQDLETFSGSEPGHAEGSSGNGALVRENSERDAIPRGGPLAS
Ga0326728_1000068038	F008672	N/A	MWTSYYNAGLSKQVVRQLLAIINRDIQAALDFVSGVPGSYAPFVEYDLALLPVQQFPAILLTPDRVAFDEEADFSLHQTIQLSCVVALTHQDRNTLAEITQDYIRAVRAVLDTLWESSPGDFLLTNLPLPSPPFPAGALSPGLASGKLMKIFVDRHTFEEIRAGAQSGFVMAATMSVSVEIEET
Ga0326728_1000068041	F062368	GGAGG	MAVSVSLTEQFIEVTTAGPYIKNAKLSVTGLTASGNNTVPHGLTDGKGNAVTPITVSLEPTSNNNFYEYQPADSTNIYVGAGSGAGTACNIYVEY
Ga0326728_1000068044	F083583	AGGAG	MSDITAIDQSYHLNYNIQIGKFTCLAPDSTVSADGCNVPSGANGTFLGVAQESILPDAMADYSGGVYTLTSGTAWPANSIPASGLGRNIRTRLFGISRVVASGAISRSAYVNIANAQGQIKAVSEAVGTYINVVGIAIDAAVNAGDVIRVLVMPFTYKM
Ga0326728_1000068048	F078112	GGAGG	MTIYKCPYEQFGISLDFSNDVGAGNTIASINAVTAISNLTELNSTAEVIAATPAPAISSSGTAVAFEVTGGVAGETHTILVQVVSSIGEKYQGEITLRIVE
Ga0326728_1000068053	F057832	GGAG	MSKTPSNPNAPEHEAAGETTVAVRKPSPGGSKADDGSPAPTSQPGKRPAGLEATAEAGVPEVVNEVLDLPPKQQDLVHKLLKEGSTFEDVVEAVNARGPKHITLNAVQTFFRGNRVLQTQRARRQVEDAEALLESVDKDPKSAEARLARATFLTGYSRVNRNASVVTPREAARYRLECENLNLKQRILMLQRKKAEQDLEYSRARTNLIQLTHAKMQGELLRLERELRAHHAGDPIGPEMLRRIQQLYGLACQPLLEEVSARGGAKA
Ga0326728_100006806	F014351	GAGG	MTDSELQERMDEAIRLIREAIEERGGLLEIEKNPDFRWAGTARLPAGRLTLNTRRTGKHAVPGDTKPVIEASVDLSFEGRLIARLLFYSTKAEVEFPGGAHRPLDHAGLARAFEAL
Ga0326728_1000068062	F003490	GGGGG	MDTLVVLFIVWGVITILFLALVFLRSRLTKKETDWIPLSDDAKEEQAIETQKVIETKSSKFNVPIRALGWAWVVMALVIVGVWIYHGINTPPPISK