Basic Information | |
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Taxon OID | 3300033402 Open in IMG/M |
Scaffold ID | Ga0326728_10000550 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 147039 |
Total Scaffold Genes | 120 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 105 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014351 | Metagenome / Metatranscriptome | 263 | Y |
F021214 | Metagenome / Metatranscriptome | 220 | Y |
F021497 | Metagenome / Metatranscriptome | 218 | Y |
F022135 | Metagenome / Metatranscriptome | 215 | Y |
F025901 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326728_10000550107 | F021497 | GAGG | METEGKTPQAQEWKVRRVGTVTFAISKPKRKAQKMRQARLKNRRRAR |
Ga0326728_1000055012 | F014351 | GAGG | MTDSELQEQMDEAIRLIGEAIEERGGLLEIEKKPDFRWAGAARLPGGKLMLNTHKTGKQAAPGDTKPVIEASADLSFEGRLIARILFYSTKTEVELPGGAHKPFGHAGITRAFEGL |
Ga0326728_1000055040 | F025901 | AGGAG | MNLRTIWIPATLCLVLAVPAMAQDKPVKAGTARYGDPTGTARKYQNFLYGVIKTLDANGMVLEKTKAGIDQIFRFQPKTKFTHDNKPSSRGDLKVGDQVYVDVHEDKKTGDLYAKKVVSGIVVPAE |
Ga0326728_1000055043 | F022135 | AGGAG | MKKRRISLAILFLPLCLPVFAMDKKDLSERYKGKYLVVLREGLAVGMCADLPETPSGDVLDVRITGESVEFHPQTGATAAMTRCGEIIPEPLHKGEIILAKFTWFRRLRGDYFTITVQNLAPHQVKRGRGASPHEHLKYGRADLIFETSDAKDYDAVASLVEKWVKPFDTHAEAAQFGNTASGVYVKQVKLGMSFAEVEAALGPPQTRVDLGEKVLYKYKDMTVEFHDGKLTDVK |
Ga0326728_100005507 | F021214 | AGGAGG | MSGTESRFKGIGGFLWQAVGFLLLAAAFGSAIYIVAHFLKYF |
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