NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000550

Scaffold Ga0326728_10000550


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000550 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147039
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014351Metagenome / Metatranscriptome263Y
F021214Metagenome / Metatranscriptome220Y
F021497Metagenome / Metatranscriptome218Y
F022135Metagenome / Metatranscriptome215Y
F025901Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000550107F021497GAGGMETEGKTPQAQEWKVRRVGTVTFAISKPKRKAQKMRQARLKNRRRAR
Ga0326728_1000055012F014351GAGGMTDSELQEQMDEAIRLIGEAIEERGGLLEIEKKPDFRWAGAARLPGGKLMLNTHKTGKQAAPGDTKPVIEASADLSFEGRLIARILFYSTKTEVELPGGAHKPFGHAGITRAFEGL
Ga0326728_1000055040F025901AGGAGMNLRTIWIPATLCLVLAVPAMAQDKPVKAGTARYGDPTGTARKYQNFLYGVIKTLDANGMVLEKTKAGIDQIFRFQPKTKFTHDNKPSSRGDLKVGDQVYVDVHEDKKTGDLYAKKVVSGIVVPAE
Ga0326728_1000055043F022135AGGAGMKKRRISLAILFLPLCLPVFAMDKKDLSERYKGKYLVVLREGLAVGMCADLPETPSGDVLDVRITGESVEFHPQTGATAAMTRCGEIIPEPLHKGEIILAKFTWFRRLRGDYFTITVQNLAPHQVKRGRGASPHEHLKYGRADLIFETSDAKDYDAVASLVEKWVKPFDTHAEAAQFGNTASGVYVKQVKLGMSFAEVEAALGPPQTRVDLGEKVLYKYKDMTVEFHDGKLTDVK
Ga0326728_100005507F021214AGGAGGMSGTESRFKGIGGFLWQAVGFLLLAAAFGSAIYIVAHFLKYF

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