Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10000550 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10000550 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	147039
Total Scaffold Genes	120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	105 (87.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

147039

Total Scaffold Genes

120 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

105 (87.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014351	Metagenome / Metatranscriptome	263	Y
F021214	Metagenome / Metatranscriptome	220	Y
F021497	Metagenome / Metatranscriptome	218	Y
F022135	Metagenome / Metatranscriptome	215	Y
F025901	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000550107	F021497	GAGG	METEGKTPQAQEWKVRRVGTVTFAISKPKRKAQKMRQARLKNRRRAR
Ga0326728_1000055012	F014351	GAGG	MTDSELQEQMDEAIRLIGEAIEERGGLLEIEKKPDFRWAGAARLPGGKLMLNTHKTGKQAAPGDTKPVIEASADLSFEGRLIARILFYSTKTEVELPGGAHKPFGHAGITRAFEGL
Ga0326728_1000055040	F025901	AGGAG	MNLRTIWIPATLCLVLAVPAMAQDKPVKAGTARYGDPTGTARKYQNFLYGVIKTLDANGMVLEKTKAGIDQIFRFQPKTKFTHDNKPSSRGDLKVGDQVYVDVHEDKKTGDLYAKKVVSGIVVPAE
Ga0326728_1000055043	F022135	AGGAG	MKKRRISLAILFLPLCLPVFAMDKKDLSERYKGKYLVVLREGLAVGMCADLPETPSGDVLDVRITGESVEFHPQTGATAAMTRCGEIIPEPLHKGEIILAKFTWFRRLRGDYFTITVQNLAPHQVKRGRGASPHEHLKYGRADLIFETSDAKDYDAVASLVEKWVKPFDTHAEAAQFGNTASGVYVKQVKLGMSFAEVEAALGPPQTRVDLGEKVLYKYKDMTVEFHDGKLTDVK
Ga0326728_100005507	F021214	AGGAGG	MSGTESRFKGIGGFLWQAVGFLLLAAAFGSAIYIVAHFLKYF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10000550

Overview

Ecosystem & Geography

Associated Families

Sequences