NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000517

Scaffold Ga0326728_10000517


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000517 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151151
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (85.60%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061463Metagenome / Metatranscriptome131Y
F066379Metagenome / Metatranscriptome126Y
F076765Metagenome / Metatranscriptome117Y
F076806Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000051719F076765GAGGMNNELLDILRIANREFQEFIDQVTQNGAQVVESRGAVHRLEKVDLRLKQVSHRLAAGSKSPAPEPETAYEVLKYREKLKALRNAMETLQFSLLAEKARLENVRANLQSACAWATSLREIS
Ga0326728_1000051742F066379AGGAGGVRCSYTWLRIMALVIPAFVLLGTVGRSSASEDDSTQSVLTPEAFNKMLGALGDFRAKNIPIKIGAGDPDAEIANLQKQPKVESIIKKRGLSLREFVLTYKAAAQIREAEKARDNWQRILQDPGTSPQAKLDATQKLGDSLKSNLFTPEQIELVRHKMPDLETLLPTSK
Ga0326728_1000051771F076806AGCAGGMKFEDAGRALDAEFDKLRKYLSNEIRPQTRKETVEFLRKSADRLTKMAERLEKEEAKP
Ga0326728_1000051778F061463GAGMEQNTGLTVALILVAIAVLMQAGAMLGIWLAIRKVPGQIESVRSDIKQRLDPLAQSALEIVNNSREPLRTITANLAEISQVLRDRTTSADRVAAELLEKSREQIVRVDRMVSELVEKVETTADSVQKGVLGPIQEVSAVVKGVRSGLEFLFSRRRVTNVSEATQDEQLFI
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