Scaffold Ga0326728_10000481

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000481
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156021
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (63.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000372	Metagenome / Metatranscriptome	1220	Y
F000633	Metagenome / Metatranscriptome	971	Y
F000985	Metagenome / Metatranscriptome	813	Y
F006230	Metagenome / Metatranscriptome	378	Y
F011689	Metagenome / Metatranscriptome	288	Y
F012097	Metagenome / Metatranscriptome	283	Y
F027602	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000481108	F006230	GAGG	MPIHANRFYALQVACFIVFALMLAGAQAKPDEQNKEGQSKAPNPAAPGADYSGMYSFLQEGEFVQITVEDQGHVIGFVSRYGDSESDGGFLDHFFKSGKLDGNQLAFTTETVHGVSFEFRGTFERGEGKSRGDEAYYVLKGTLVENTTGEAKKTSSRSRQVEMKSFPQDMAQPPSEKK
Ga0326728_1000048119	F011689	N/A	MLKVLANRGGWVRAVCVLSVALVCVMGTVQAAHSHPENSTTSHHTCSICATAHAGLNTQTPAPAPVLATAALAILVAEVSPIFRPVTTQFIRPPPAF
Ga0326728_1000048123	F000985	AGG	MKNVYEVLRQKELELTRLEKEVEALRIAAPLLSDEKEPLVEVPKPSLTATAPPQPVRIPPVVAAQGAPAPARVGWEDAAKRWP
Ga0326728_1000048146	F000372	AGGAG	VTSPGSGVTRRWTVIASGLLLLALALVVIYTGPNAFLSPAALVTVAAIGLAALLLQVRFRRDLPNIHSPLWLNVLGILCALVSLFADYLRMTRRMLDLVAFAAVLCFGISGSLILRALRRRLRTPQPTQTE
Ga0326728_1000048150	F012097	AGGGGG	VSTLFGLLAETPVTAERPRVTPIREQIERTAASPAASVHDEQIHSLVQQLFFRHESKPVRHVGFATVEASTETATLCLEVARVLAAEDRYDVGLIDAHPDSVPLETQLQISSPHRAEATWPIAPRLWMVPRQSWLPDAGGQRITDQNLSRLREFTTEFDFSILSCAPVSWLTASIGQACDGLVLVLTANKTRRLVAAQIKEQMSKAQVPLLGTVLAERRFPVPQGLYRSL
Ga0326728_1000048173	F000633	GGGGG	MRPQFASHLATYDPGPRKEESELRFEVNGQMFFVNFIPEEGRWYCFAPTATGVQRIPVSMDASPYEEFTVSLDEQAKEVVN
Ga0326728_1000048188	F027602	GGAG	MAKRSLRILKRVSNVPSLGICESCNAQFSADPRQLGQPGVQHQFNAHKCENSTSAAPVAGEKAKVAGK