Scaffold Ga0326728_10000464

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000464
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158521
• Total Scaffold Genes: 161
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 142 (88.20%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003743	Metagenome	470	Y
F006173	Metagenome	379	Y
F011988	Metagenome / Metatranscriptome	284	Y
F053734	Metagenome	140	N
F058622	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000046431	F053734	AGGAGG	LGSGSHISNQGRSGTWNRAIDAILKSGAAGGPSRLYKSIQQIREQDPSLSLRRLLKRTAELQLSSWQNPWMDGEKHYVLEHAREFPVADLARRLQRTPSAVYQLLWKYRESAKFQDGYTQEELAEALHVSPRKVRGWVRLGWLTLYQDRIKDRSLVRFLEGHSDEIDAKRLESDVRLWLLDLGFHEDAIHSGRWLRDRKQSMRVHICDRCGRKVHGNAFYRHLKACAKGGTCITDNRRML
Ga0326728_1000046432	F058622	GAG	MRTQSRIRSLNSLKRRIESETRSEAEWQARKVPWPTLLEYREQYIKWEAFTLWVHAIEEAEHQTPDWLRREVERRCAGIESEKSPKLWKCLDTWKHKTVFAKPNREGWMRAVSFFAARDLAYVRNWAYWGYCERQWSVRRPASYPSFDEWKSAAEICPGEVLDSSGLRKERTALIKVAARCGKERLERAIEIYVDLETFAYWLRPIVDHDLPLSGRVLKEFQSRFPSLEMCDKWNWDQFWARLRHLHFQEAESQGWLDAVVYTAELHPRRIKVIDYWLLYWASQWPKDQPASYPPFEEWRCKAESYVPNGCDPGGVSSVPFQG
Ga0326728_1000046457	F006173	AGGAGG	MKLFELLPCVDLPGQRSLTVAPPIDLMVKQALARLERRPSRQWLDAVRDLETGGPVRLEVSLEDLALLLERVDFSSGRLEDIEAMNFWNHLEASCELHEALGHEWSNQLGFDCHESFALAWRVPEGMIGYLAWLARSARPVPTLPEELRHLNPRCKLAEIAARLLDTLAAHLNGMV
Ga0326728_1000046462	F003743	AGGAGG	MFGPMQVTKLFELSKLETVDAAVAKLLEFAEYPQIFRWFQFPTALVVLVAHADCPDSGAVYVYDRKKGVWLWIDFNDQNYGGYSPSEFDVLINQCHFFRLAASPALLESPVQWMITPGQGPKVLGRLPA
Ga0326728_1000046466	F011988	GAGG	VTPVGDVEVEIVFRIAVRGRAGDLAQLMEAVNQTHAVVMWFVENPIESEEQGQNGVTTTAGVNSV