NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000369

Scaffold Ga0326728_10000369


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000369 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)180063
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (65.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000477Metagenome / Metatranscriptome1097Y
F001158Metagenome / Metatranscriptome763Y
F003713Metagenome / Metatranscriptome472Y
F009018Metagenome / Metatranscriptome324Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000369126F000477GGAGMPATKTKKFTPEIDAQLYDEFVAVAERNGQTKRHVLEQALGFYLHNVVPSQHLVRPDVMDAFEQSVARNRDLLQRLAK
Ga0326728_10000369137F003713GGAGGMRKAVRILAVCALVLSPGILLAGERFDGKWLTTLTCPEKGKTEGYTWKFASVVNAGKFRGEHGTAGEPGYLLIEGSIADDGAAKLSATGIVASRKYGTGVFTSQGTDYSYNIKAQFQDTQGTGTRDKGLGIVGRPCTFDFVKQEATK
Ga0326728_10000369165F009018GGAGGMTRHIRRFITTALAIAAFALATSAAMAQSYTGNWQATVTQSQRSNGTYCVTLTDDGSYGFPHSGEAVLNGQNNPYGGYFTVIDGLITVTFTYPSGEGDCCNFQVFTAHASNGRIAKGVFNYFGLTDIGLLAFGKKDGC
Ga0326728_1000036926F001158AGGGGGMEALSVVLYQNDPRTAQTLAVSLSQHFDSVYLAGTYQEVSPAVARHRAEAVVLDLETSGPDEVKRLHREFPDLCIVGTHRLADDQLWTQAMSLGASDICEPRKDDVVRSLLQGLTHRAAA
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