NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000362

Scaffold Ga0326728_10000362


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000362 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)182640
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)103 (63.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000548Metagenome / Metatranscriptome1036Y
F001364Metagenome / Metatranscriptome713Y
F002944Metagenome / Metatranscriptome518Y
F004091Metagenome / Metatranscriptome453Y
F022705Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100003621F001364AGGAGGMFGGLLLVVCVILQFHYHDAIPWYIWVIAVIAQCVAFGEPAMKSASKKS
Ga0326728_1000036212F002944N/AMKNFLDALVAVLAGNAIYYLLMPHLPRVVRHGLFKEDWGLLVDFAICTVIFAAVKYGRRRER
Ga0326728_10000362150F004091GGAGMKKTLFILCLLSATAAFAQFGGSLNSQPQAFEFPSHPAHAAYTPMSQEQSVLASSSYTSAQGERPPSDFPQAEAVSLGAYAREIRKQQAQLKKSRVVWVNQ
Ga0326728_1000036243F022705N/AMELFLNLCWLSLLLPAWLLWRQRTSASGSGHLAARPLVFACALGCVLVLLFPMISATDDLHPMRSEMEESKRAFRHPDHCACTIHALTHSAQPVLSSSASLTPAFEQLGTVFPFMLQTLGTFSAPAPTGRAPPSEHPILL
Ga0326728_100003626F000548N/AMAKTNSGGPRWIGIPARVFAMTFLFTLLSFAVALLLSIMGTVVYSQVKHVAPNLAFAYRYIAFPCAITAGAIVLVLSLAMEIRNYRQRKTLAGIERVS
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