Scaffold Ga0326728_10000194

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000194
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 251895
• Total Scaffold Genes: 322
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 231 (71.74%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042607	Metagenome	158	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y
F074102	Metagenome	120	Y
F085609	Metagenome	111	Y
F091043	Metagenome	108	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000194142	F031713	AGGA	MSNKNVTIDLKARKDVDGQTFYVGKIKAPILIDCSMGAVFLVFVSDKGDEQLQIALMDNKELDD
Ga0326728_10000194148	F074102	GGA	MKKQKTVVPFSFKDMTNQQMVDHLNENYPISLKHNEDLVERVHARYPLLDKSEVGIIIKAVFASFRDLLVLGKVLNFNNLFFDAKLHFFEHRRDGHILPSLKVRVSTPPRLRK
Ga0326728_10000194164	F091043	GGA	MNGNVSSFFDELLADLKCQNDTKAYIVSIYGKYKTAEFDLSKDSITLLFAQARSKQDFLVYQNLGDWIFFANTIVPQHLKFASKEYYDTIARLSYYSCYKLINRQWKLFEELADDFPALEAQVKRILHHTPQIFVGNHIVPYDF
Ga0326728_10000194183	F096147	N/A	MSVEALKNEFVPKFLLKGEQGFYRNLLALATKLLMNTQKGTYKGTSPELLFLRCYEQFIILYRREGEDIYLDLARVFRRAAHKVYRTMLRSKMTEKNSRFLNLV
Ga0326728_10000194197	F042607	AGG	MPLKIIDNKKVEMTDDEWTMYQKIVKSYTTMMNKGEDLFIDLFESNDEGIIMFLKPPSKRQTSLEVFLFLMALMQHQHLRMMHKQVDEVVAELKKKK
Ga0326728_10000194198	F036462	AGAAGG	MSQQVRLGDLLGSNLVEDFRNFDLTEIQEVLEQLRETDAIDLAHAELLQQKALRCADIMAEYLAKMVKTISYLESQVNSIKNRVSLEYVAPDGARTTVDMKKWAAESSPDVEQAYIKLGDAKGGKMALDRKYEILIKAHHHFKDIAGGMRKTILGYSSGTSNAAEGYE
Ga0326728_10000194210	F038776	GGAG	MSKFSIDYSGLANQITKKAYRLSDVKDQLETVAFDVVRFKDGDKGAELWQVQSADDGDYIVALYDEDESEKTASQNPWSVLVTKSGTDLQISYKGDPIVRFAASKLGIPSTELHKAEQYLPEKLATNSKLVKTLLSELNEAARQEVARRYPELV
Ga0326728_10000194213	F071164	GAGG	MRTAELLNAMAAWLESPNNEAMLLAEGDEDCLHVVAESCVLAAELLKKAAEEVDTLEPATESLITAESIEETAALAQALDAAGDPQLKKMASVLDELLLTIAAPPQALAEKKAAESNRIEELRKKYQGVREKLHEYNKSGISEKAIDKSNFTKEYRILEAPLNTRYCPDHPGAQIARVGEHMWQCDLDKKTYNFETGYELNNGTKVPGGDVAEQTQSLNIPYHAIFDTREGRLGYNK
Ga0326728_10000194214	F094469	N/A	MNKNALKKILDHPDKDEIIAKLVLDYPAKDIHDWLAAKYTNVSEAKFVVAEKSIKTFKDNYLDVYNMIREDIQKTKQAVATSTEAELELAVRNNPTYKSKMLELANKEIDVRQMVAQLCIAIETRLGQVFDEIQENPRDINSRIDRVLIEYGELLGGLLEKYYKFTESPADLVIQHNVTLQAVDQHISVFHDVIREVLSQLDLESSMLFMELFQEKMAKLKPPTPESMPNTDVKLAEAKLLNETINKKLNQ
Ga0326728_10000194229	F069394	AGG	MIKKSYSVQMSYNVSDSEKQQAEKALSYFKATEKLLQQASDHLNIMKTPFKDNPDMSEEDVMKARAVIRRFRDKALENFDKFKEAAFQCVSVMQTFATDTQTVKLMKSFISSVDDLETKVNLLSELFNDLQSKDFSKNVVTSIEDVQKQCDEIDEIIDERIKSHIQTNILATSWVDSISNDLQMKIEKKTPLIVDLFNKRQDQLNDAIKERTTLGN
Ga0326728_10000194271	F040370	N/A	MGTNNFSKTDLNNIYNIVQSSMIVYPKEIIIATLRDFFSQDSYYHFSKDQWGFANTTDHTDLPPGADLPRGPGANPQLNPSPILPTRIFIGENWRYDAIFYPAILVKSGGTRYVPISINRNQGGIEFSKILFADGYGNETAIYRPVAVVTNGAWEGSILIDVMSRSLRARDDLVELIGMCFTEIHFDTLHDIGIIVKPITVSGTTETDDRNDKLFRQTLTLDIRTEWKRVIPIENTIDSIFFTATFSDLSQPNSPIAANLTINTEVGMVDMLLNM
Ga0326728_10000194304	F085609	GAGG	MQDKVVAEAVRIEYEEKTGKLFIVFEVKDEKYKQDIKKNWTKDIEYRLVDKTLVESSNE
Ga0326728_10000194319	F065185	AGG	MKITFEDKSYIECVKSDNPGKIVVTISAKDHTDPLKKITNAVEITVEEFKKLISDVQL