NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000194

Scaffold Ga0326728_10000194


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000194 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251895
Total Scaffold Genes322 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)231 (71.74%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Associated Families13

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031713Metagenome182Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042607Metagenome158Y
F065185Metagenome128Y
F069394Metagenome124Y
F071164Metagenome122Y
F074102Metagenome120Y
F085609Metagenome111Y
F091043Metagenome108Y
F094469Metagenome106Y
F096147Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000194142F031713AGGAMSNKNVTIDLKARKDVDGQTFYVGKIKAPILIDCSMGAVFLVFVSDKGDEQLQIALMDNKELDD
Ga0326728_10000194148F074102GGAMKKQKTVVPFSFKDMTNQQMVDHLNENYPISLKHNEDLVERVHARYPLLDKSEVGIIIKAVFASFRDLLVLGKVLNFNNLFFDAKLHFFEHRRDGHILPSLKVRVSTPPRLRK
Ga0326728_10000194164F091043GGAMNGNVSSFFDELLADLKCQNDTKAYIVSIYGKYKTAEFDLSKDSITLLFAQARSKQDFLVYQNLGDWIFFANTIVPQHLKFASKEYYDTIARLSYYSCYKLINRQWKLFEELADDFPALEAQVKRILHHTPQIFVGNHIVPYDF
Ga0326728_10000194183F096147N/AMSVEALKNEFVPKFLLKGEQGFYRNLLALATKLLMNTQKGTYKGTSPELLFLRCYEQFIILYRREGEDIYLDLARVFRRAAHKVYRTMLRSKMTEKNSRFLNLV
Ga0326728_10000194197F042607AGGMPLKIIDNKKVEMTDDEWTMYQKIVKSYTTMMNKGEDLFIDLFESNDEGIIMFLKPPSKRQTSLEVFLFLMALMQHQHLRMMHKQVDEVVAELKKKK
Ga0326728_10000194198F036462AGAAGGMSQQVRLGDLLGSNLVEDFRNFDLTEIQEVLEQLRETDAIDLAHAELLQQKALRCADIMAEYLAKMVKTISYLESQVNSIKNRVSLEYVAPDGARTTVDMKKWAAESSPDVEQAYIKLGDAKGGKMALDRKYEILIKAHHHFKDIAGGMRKTILGYSSGTSNAAEGYE
Ga0326728_10000194210F038776GGAGMSKFSIDYSGLANQITKKAYRLSDVKDQLETVAFDVVRFKDGDKGAELWQVQSADDGDYIVALYDEDESEKTASQNPWSVLVTKSGTDLQISYKGDPIVRFAASKLGIPSTELHKAEQYLPEKLATNSKLVKTLLSELNEAARQEVARRYPELV
Ga0326728_10000194213F071164GAGGMRTAELLNAMAAWLESPNNEAMLLAEGDEDCLHVVAESCVLAAELLKKAAEEVDTLEPATESLITAESIEETAALAQALDAAGDPQLKKMASVLDELLLTIAAPPQALAEKKAAESNRIEELRKKYQGVREKLHEYNKSGISEKAIDKSNFTKEYRILEAPLNTRYCPDHPGAQIARVGEHMWQCDLDKKTYNFETGYELNNGTKVPGGDVAEQTQSLNIPYHAIFDTREGRLGYNK
Ga0326728_10000194214F094469N/AMNKNALKKILDHPDKDEIIAKLVLDYPAKDIHDWLAAKYTNVSEAKFVVAEKSIKTFKDNYLDVYNMIREDIQKTKQAVATSTEAELELAVRNNPTYKSKMLELANKEIDVRQMVAQLCIAIETRLGQVFDEIQENPRDINSRIDRVLIEYGELLGGLLEKYYKFTESPADLVIQHNVTLQAVDQHISVFHDVIREVLSQLDLESSMLFMELFQEKMAKLKPPTPESMPNTDVKLAEAKLLNETINKKLNQ
Ga0326728_10000194229F069394AGGMIKKSYSVQMSYNVSDSEKQQAEKALSYFKATEKLLQQASDHLNIMKTPFKDNPDMSEEDVMKARAVIRRFRDKALENFDKFKEAAFQCVSVMQTFATDTQTVKLMKSFISSVDDLETKVNLLSELFNDLQSKDFSKNVVTSIEDVQKQCDEIDEIIDERIKSHIQTNILATSWVDSISNDLQMKIEKKTPLIVDLFNKRQDQLNDAIKERTTLGN
Ga0326728_10000194271F040370N/AMGTNNFSKTDLNNIYNIVQSSMIVYPKEIIIATLRDFFSQDSYYHFSKDQWGFANTTDHTDLPPGADLPRGPGANPQLNPSPILPTRIFIGENWRYDAIFYPAILVKSGGTRYVPISINRNQGGIEFSKILFADGYGNETAIYRPVAVVTNGAWEGSILIDVMSRSLRARDDLVELIGMCFTEIHFDTLHDIGIIVKPITVSGTTETDDRNDKLFRQTLTLDIRTEWKRVIPIENTIDSIFFTATFSDLSQPNSPIAANLTINTEVGMVDMLLNM
Ga0326728_10000194304F085609GAGGMQDKVVAEAVRIEYEEKTGKLFIVFEVKDEKYKQDIKKNWTKDIEYRLVDKTLVESSNE
Ga0326728_10000194319F065185AGGMKITFEDKSYIECVKSDNPGKIVVTISAKDHTDPLKKITNAVEITVEEFKKLISDVQL

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