Scaffold Ga0326728_10000115

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000115
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 322233
• Total Scaffold Genes: 265
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 230 (86.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007238	Metagenome / Metatranscriptome	355	Y
F009115	Metagenome / Metatranscriptome	322	Y
F027820	Metagenome	193	Y
F080776	Metagenome / Metatranscriptome	114	Y
F095800	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000115199	F007238	AGGAG	VITVTLMGPDKALSVVTISEETTVRDVATSKYHLFWRVTKRNGLSVVPFTTTVADGDTVAVENE
Ga0326728_10000115214	F080776	AGGAG	MADDTKTFEENVRAQLQKSVSQMKEIEALAKGKASQAQTDAINALKNKKQEIDTKYQGLKTSADTKAKAEIQADLDKFNVMLGQVASKLKGPAPSK
Ga0326728_10000115225	F009115	GGAGG	MSVVTKMAKHAIRNKVESEINNAVAKLETLKAEAETAKADFEIKAITELLTKQHEILHRLREPSK
Ga0326728_10000115253	F095800	N/A	MRAAFVVRLGPQTDPARGRFDGSVEEVDTGKRVKFQSAEELLQFLGQSFEETLRRPPESMVEMPLEDIA
Ga0326728_1000011554	F027820	AGG	VQRNIDPLHDLDLSTLFSGRMLESENYSAKLSKRAARRIIQRAFVLMGREKSLRRHIRETELTTLWVLEDWDLAWTVVLHRGRFEVERRPARHPDVTLTWPAAEEFFQQAEQAGAGAPPVNLLPAEGHRRFFEPLLRGFFKAMYHVLGNPVDDVGESLL