NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000085

Scaffold Ga0326728_10000085


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000085 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)372279
Total Scaffold Genes340 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)281 (82.65%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F003145Metagenome / Metatranscriptome505Y
F018220Metagenome / Metatranscriptome236Y
F070797Metagenome122Y
F102355Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000085120F003145GGAGMQLKEAYLDQVVEEVEDLSARMALLKGRFAQQKVSVKLEHYWELEYVRTSFAEFKRRIEDLEYADDAQVDRFQEAVETAWKDLIHAVDTLLAALP
Ga0326728_10000085228F070797AGGAGMGNHACPLCFAKVPRTLILAKSLEVDCPACHAELEVSRGSQVLASFVGVLAGFAAARLSRDASGTAQWTLPTVAAFLTFGICSALALLVHSDLVVRPKISPTVFPHIHA
Ga0326728_10000085229F102355GGAMASYSHFLGRRVTVQYRAGDILVPASGTFVADSGRSIFLEQHIEQRGKRSYFRWEIPYGYLQRIEEMREPETRAIGAAVPELPENQAAAAGAAPAPPDTHALLPVRQRPKTA
Ga0326728_1000008527F018220AGGAGGVQKIFRCEKCQRGMRVVGSTGLGKEVERVVLCPYCKTKNKVMWPKGDNFNVQRIATR
Ga0326728_1000008594F000043GAGMIYQLGWTTLPGLRGLSVGEFRATPTDAPDNEKGVAIGFADEAERDSFLRLIEAEFATRRFSNGADAFDTVKAYVLERAGKRV
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