Scaffold Ga0326728_10000039

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000039
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 501072
• Total Scaffold Genes: 437
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 286 (65.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000677	Metagenome / Metatranscriptome	940	Y
F000833	Metagenome / Metatranscriptome	871	Y
F001021	Metagenome / Metatranscriptome	804	Y
F001403	Metagenome / Metatranscriptome	704	Y
F002585	Metagenome / Metatranscriptome	546	Y
F004703	Metagenome / Metatranscriptome	427	Y
F052931	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000039131	F001403	N/A	METSSLDILYLENDPRTQQPSACIYLKTAGKQDYAGVKADRLVSAHCLSFLELDGEIRRLHAELEEIRARAKKKFYKADAMAAGAD
Ga0326728_10000039353	F000036	GGA	MAHKDIFWMACDSTEQLRAEYGPFHTREEAEQEARQLGFGYLLRYEHLVSDEGEIEEVRCVFLELANAPVAARSGVTFHTRCATCGEAAAHETGWQAEVWADIHEFEHSRHKVRLFERARGEGLREISDGRGFAA
Ga0326728_10000039379	F001021	GAGG	MKKTLLATILSVCLSFAAGIALAEKVHDWADLESAHNHVLEAIKELDRARAANHYDMAGHGAKAEEHLRAAERELHESIEAAKMAR
Ga0326728_100000395	F000677	GGAG	MKYLLSILLLSTAMQAQVLAVTKFALPDAPSQQRSFWTLENNVNVSILAGLITADAITTQRGLAQGFREANPIMRPFVTRGAAGQAAGSALGFGTGIGVVYLLHRTHHYKAERVTMRLMVAGESGFVANNIIVTR
Ga0326728_1000003981	F000833	N/A	MPHSMLRSAMCCLLAVVFPANMLAGESPSAMLYTSGSAWVNGGTVPRTVAMFSGDMLQTRSDSTASIQSNGSNVMVMADSLVKFEGPALEIEHGGVRVTTSRGMAARAGDVTVKPAGASWTEFQVIDVDGQVQIAANKGDVTVQDDQGTTTVTQGQQTTRDDTSDTEKKKKKRRRGAGVPTAAKSGIMSSPWAVYGGAGAITGVGIWLLLRDNEGPVSPSCPSNPCN
Ga0326728_1000003991	F002585	N/A	MFLLRLALLSCALLLPQVALARKKTQFPSVRWTAGAPGCSFARGDDGRFRWTMSDKDLDITLLVDSQELTKSRRRFYHVFGVYTSVTYKGQGDFHYEANLRLDFVSHHGIVEGYLDPSELQNRLQNDLDTLVFETERQIKKNPAVKEEKTAYLQTYEKEGAEFIEFLTSQYLEPATLNPGNPEAHGWVFFGTSNKWIGPWKEHEEFILEVRMEDKVWQFPFSLPPSGDELILRKPPE
Ga0326728_1000003994	F004703	GAGG	MAQKAATAHQPVISIRISEALRSRLETVKQVIAHKTGQSVSTSEAAKQLLESARDDRLELANLLTEPTDSLLNVRGKAEAHLPLTQAEWALVAYHCAKGAESFMSTEQGLLSYDSLAEILEAFLAVYAIVRRRKKLSLDFLYLMTLPEDKQVAAKEPDDVDSDDLRRVVTRTIQMLRDPAQKRRRPLLAVRNLYTVLDQETFSNIEKLNEVLWPYWNTLWRVCARGHYAVQRKPLRPKPAGDDADFEGPMQRGLPSQEEGGYRLDLVREEGNDFSPYLHFPGPLAPRYPISGYPRTAEFRRMLEGLDVTRPLAQWHGRYFYAHVGITEDQDFTVNFCACDNGISFIFPMDHWKSIQNLFRRSWQSPDVIQAWDTLALEYGEV
Ga0326728_1000003996	F052931	GGAGG	MGRIRFRLPRFSWRQMPEIAPKPAASVTANTPADPLKKPTQPMLALFVSTANGSTIGPSESKPPKAFAWEKTKGIE