 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10000020 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 653202 |
| Total Scaffold Genes | 625 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 403 (64.48%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000072 | Metagenome / Metatranscriptome | 2651 | Y |
| F001932 | Metagenome / Metatranscriptome | 615 | Y |
| F008261 | Metagenome / Metatranscriptome | 336 | Y |
| F010059 | Metagenome / Metatranscriptome | 309 | Y |
| F016697 | Metagenome | 245 | Y |
| F018229 | Metagenome / Metatranscriptome | 236 | Y |
| F022395 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_10000020276 | F000072 | GGA | MDTEQTIAEIERLERIFAAPDPRPLSPSDLAAANRKHDEMLARSPWFRLWQSYGICCRSGSVEFRLGGVDS |
| Ga0326728_1000002029 | F022395 | GAG | MLLAIGAYFCSGLALWAQASDSQTDEANKSWTATTDSHSENADPIRTIESHTQSGNRTLDKQSVQRRGSDGLFEPYQDIEKETVQVDAATVRTITRTFGRDADGAKTLVEVIEEEKHILPGGDSKVVRATSDPDANGNLQLVRRRIEETKRTSKDVEETKTTVMLPSVNGGLVPAVKVQERREQGANGTGESQQTTLLPDGAGNWQVGEIRRTTTRQEGDNRSTEEQVSLPDSEGKLGEVSRTVSNEAATASGEKRNTVETYSISVPGSVGDGSLHLVKRATTAQFPSSTSQQTIEQQVEQADPGDPGSGLRVTILTTDTVRPGPSGAQATRTVQVRDANGSFGVVSVDTTKSDNIHAIQVQIAPSEVIK |
| Ga0326728_10000020328 | F016697 | AGGAG | MKGKSNFLSWGLTAWGLMAVGLAAVAVGALRLERTAPVKAGREVGPGSTIVQSQFGGQIFGFDIDQNGTEGVLSEAQTLNAQGKILAAVETFDQATGQILSVVKKLESQDDFLTLGIVGSSVGLVEHEHEKSGQIYVTKRIYEELKPVDSNKFTGTWKSGLATEDIILGVSRNRGTGGTFTNAILYFENSGNFDTLVFGTNFNTKKAGPQVTLTDPTFFFSNEPVVGYDYVTNQAVVASSSGEVGGPAPQIALVDLTTGTVTQFTGILGPPPYHQGTVNGMAVDSEDGIAVTSTELDARIEYYDLAKQTGFAVSLPGDVGQLQSGTDVEYDAVNKLFFIAQEVSSTGTGSSIQVYDTKGNLVESLNGFNFSNAFNVIGTHIALNPSNRSGYVDGPDSGVTEIQSFTY |
| Ga0326728_1000002043 | F001932 | AGGAGG | MRQKLVLWFLLVLTGLVIGFILQYSRLQRVQEELSASTKQLGSCKSSQQLAQLRDTTTMMYLEVVQKNYGKAGEYSGEVFDQAQQIASSTEDPALRNLLREVLVTRDQITADLAKGDPAALSEIQRLLSNLEQTAKH |
| Ga0326728_10000020577 | F008261 | GGAG | MKIWHLCYAALGIAVARWVYKRQALAVEADPVSRLRSSGLL |
| Ga0326728_10000020587 | F018229 | N/A | MCRTSLWGGAGFVACAYFTWGAFGHVIQNSYSWPHDAWTAATYVVWIVLLTALTFDTRCWQERLFFGVLVVNFVIGFGLTVWKTAPAADVREARICTGTLWALAGLLSLTTVGREKAVGQ |
| Ga0326728_1000002087 | F010059 | GGAG | MVLSLADAVAIFNKWKEDSAEILVVIESPFQQSRRGVLEQSIDWALGLQGQMSEASIDPIKKGKKAGTVMLQAPTGNLSLSIGLCTFVYEEPREAKPIVRAEAEDTTVSALSVFFPSNEVFVFYELREPIGKESLPGWSTI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |