NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000010

Scaffold Ga0326728_10000010


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000010 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884502
Total Scaffold Genes753 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)607 (80.61%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000540Metagenome / Metatranscriptome1043Y
F000655Metagenome / Metatranscriptome958Y
F001356Metagenome / Metatranscriptome716Y
F002201Metagenome / Metatranscriptome584Y
F003084Metagenome / Metatranscriptome508Y
F003629Metagenome / Metatranscriptome476Y
F005823Metagenome / Metatranscriptome389Y
F007039Metagenome / Metatranscriptome359Y
F008510Metagenome / Metatranscriptome332Y
F009349Metagenome / Metatranscriptome319Y
F009411Metagenome / Metatranscriptome318Y
F009619Metagenome / Metatranscriptome315Y
F013787Metagenome / Metatranscriptome268Y
F017448Metagenome / Metatranscriptome240Y
F020757Metagenome / Metatranscriptome222Y
F023387Metagenome / Metatranscriptome210Y
F032347Metagenome / Metatranscriptome180Y
F034255Metagenome / Metatranscriptome175Y
F063538Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000010150F032347GAGGVAIVVDFDAKNNVLRATVQGRMSGALLLEFYSATAKYLQSHPPCRGIFDFSHATEFEVSSHAIRQLAAAPPAFPPGYARVLVIDKDFIYGLARMFQILSEKTRPDLHVVRTMDEAYRLLHVESPEFKPLDFQI
Ga0326728_1000001016F003629AGAAGMKRDRLLNRRVVFKLHGMDPLDATILKQDETGYWIQGGTLAGQLDQSNCSLPESDVRYLEFSRIEWLRAPRQRS
Ga0326728_10000010251F002201GGAGMWINEVAPERLAELFHHYHQALMPEISGKGSEGRGSWREVPQPEKSRLVNAARLALLELESMTSEPAKRRPYFAQPGEAEWGC
Ga0326728_10000010349F007039GAGGVVGRLLLIDVVASVAVLGLWYLVFSHYNRKKGAAVLRWVQSACVGKGRILESSWTGTSRLQARLHFPSRWFENARVTVKFRPRALPIQWLISCWHKQKETLTFEADLDGSPSFRLEVVRHRWCAHNRGISSPKRDDREWDVYEPGAVILTTRTHWKQDPSAELNALMSARRQEFLEVHFRPESPQFSAVVHLESLADPNAATDFVSALREIAAGASTHRQ
Ga0326728_10000010354F001356GAGGMPKRNKGNSPQPALKYRQLAVAELNRGRRGKHHELVQGILKELKMAAPGSALEIPLADVGGIGLANLRSAVHRASAAESLPIETLADEKNFYVWKK
Ga0326728_10000010372F008510AGGAGMKQAIRISILMCGLVGTYVVAAVPQVPAPDGGPILVCPPQQQLQGRCVQLPPMMK
Ga0326728_10000010425F013787GGAGGMSAISDAEFIRLLRKDVDYFTQAMERFEDLIPNVCAPVQDQWRLQAQSRKDFARELEILLDKAEGCINPLLQSSENTNGQESASC
Ga0326728_10000010435F000655N/AMIWWFLILGVSTLVVVCVAIALYMRLRRHLQAAHAAQELSASQLERENQSGKIEG
Ga0326728_10000010445F034255AGGAGMKSIRKYTYAVVLTLSALNFAPNLASAQDEVGSFTLPHEVLWQNAEVPAGDYRFTLQAMGPTEMLTLTKISGAPASFMLMVNDTETINGSETARLVIHSKSGSSYVSSMTLPLFEITLHFAAPKNYDKEIAQAHTSATNISAQ
Ga0326728_1000001053F005823GAGGMRNLPSKFVSPSVTIRVAGSLSQGHLTYLDQLVSSAIECALWPLLDLAHLEELDHVALMYLAGGEGRHFGILDCPNFIREWMRYEKDHQAA
Ga0326728_10000010547F017448GGGGGMVNDDLVKCPLCGGFTHVAKPELLSALRDTKIRQQVENYVASLLQSQSADLTSVAATPPQSRDFTKDVHHWNPNVPVWRRSPKE
Ga0326728_1000001057F003084GGAGGMSGKQAVIAVLLMAMCILGGSAAAQDEKNELTGMVGRMVISDQGIVGATYPNPFVRSGKGLTFEIDYARRLLSKEIYAISGEVPAVFNLDEDLGSGSDVVPKDYKQIFVTPAVRFNLFPATAVSPWVSLGGGFAYFNENKNLNYYGTNPGGSSTSGVLQGGLGVDVRPFRARFRHFGFRAEVRDFWSGTPKLPLADTGKTRQHNYLIGAGVTWHF
Ga0326728_10000010602F020757AGGMNYNNLRFCNRWLVILALFALGVQPALAKNAPLVSGSYQVVESKDLGSESQIQIRIHLVNHGSSDFSIQRMTLWDLSHADKGGTSACAVALRAHASAETTQQFTIRRSDYQSWQRGFRPRLVLQMAGPGRAKSKTVVRLDRISGKEAK
Ga0326728_10000010609F009349AGGAGGMKRGFWLVLSLCSVPNLLAAQFGIYQHGSVVRMHMGDCMLGHRGMMVAFGPPSIPVQDSCPEYTLVSPNVVYVIVGKTSNQLIPLAEVIDFRLQKNELAVRLDDAKRETKFEIKEMFVRSDWDRIQRHIDAQMKAAEVHDAER
Ga0326728_1000001073F009619GAGMGGFSILTNRKRAVVALVHSVVFLLIAVRQMVAANPASGIWVPSTVPTGTWILCGVFTVVSSILSWLLVISRGWMEKFYFGFCTVSASSGLLRTAAGDQAFHAGIYIRVIMLVSAVLVGVLIVREHSREASEYAETSS
Ga0326728_10000010745F000540GAGMAKKKAANVAPKLTEGEQDLLSQMEGDYQLETDSLGSNPVLRRLKDGEVIRPLSANASTVKALQGRGLIRAAKGRDPLTILWHLTNK
Ga0326728_10000010751F063538GGAGLNQEKTTITTFQFRLNGVIITHLKVRPVAIDGTTDHRELVACHDTLGEFAIDDNEQLADPALSRFVLEVRDVSIPPSERRFLPNKGWKVVTTREYLALLESTGVIDSL
Ga0326728_100000108F023387AGGMNLKPAHPHPKSHRPELAANATSNRGQIAKRRSNRMALHASVGLAGEDRQKSPFTTPAKATKLNKHGAAVQLSRELLVGSVVSVNNKQGTKLSARVVAQLAKLEGVSTYAIEFVEQDERAETFWGITFPPNTSNA
Ga0326728_1000001088F009411AGGAGMLNDELRKQAGIARLASDLRSAKIELLSAQCATDRLRLQYSVADIVSFGERQALKGAIASAGALCRFFSSIEDQLKEAEEQE
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