Basic Information | |
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Taxon OID | 3300033402 Open in IMG/M |
Scaffold ID | Ga0326728_10000004 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1371642 |
Total Scaffold Genes | 1171 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 791 (67.55%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009471 | Metagenome / Metatranscriptome | 317 | Y |
F011810 | Metagenome / Metatranscriptome | 287 | Y |
F015124 | Metagenome / Metatranscriptome | 257 | Y |
F057044 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326728_10000004189 | F015124 | AGAAGG | MILLVTTSSRAKECAASLEQGTGHKTHLASTVPQAVSKLQSADYDGLAIDQSVLESDFRAFDTLLNHCGIAMPLHVNLALHSTERVVREVQVALRRSEKERLLATRAAGQLLRNQLRSEITGILLNSELALRQTAISPEVAEKLKSVRELAEKMRSQLQIS |
Ga0326728_10000004379 | F057044 | AGGA | MQDEHDSMRQMVNLGLTGTLLGVVARFITHANIAVLIGTVGGLLVAFFLAALHGEQV |
Ga0326728_10000004450 | F009471 | GGAGG | MAATADPVTETDQRERIWFFPHKFWQATKNMPKDEAANLMEEVERYAAARDFQALSKYPFVFVGDPYKKKKHNSAA |
Ga0326728_10000004853 | F011810 | N/A | MATRIVFITIALALIGTGIWAYHHDENLRKNAPLVNLGDPNEVVRQLLGDPTSEGPCGSLTPTPKGCTDEYVYRYWYTIFQPQHEVIWFDHAGKVLGEQHVRSPL |
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