Scaffold Ga0334722_10227672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334722_10227672

Scaffold Ga0334722_10227672

Overview

Basic Information
Taxon OID	3300033233 Open in IMG/M
Scaffold ID	Ga0334722_10227672 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1374
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5107	Long. (^o)	-110.3566	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041763	Metagenome	159	Y
F054585	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_102276721	F041763	GGAG	MTITVLSKRIRDALAQAPDGMTAMELSFALDIGASQISRSLALMPDVYIDRWEKSRSKYAGVHCLAF
Ga0334722_102276727	F054585	N/A	EAAQDAAAAYRAARTEQERQQRFESAAQAMCGENAGWKLLDDGSVQCYTHRGLKTRKVTL

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