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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033233 Open in IMG/M |
| Scaffold ID | Ga0334722_10073418 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2638 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5107 | Long. (o) | -110.3566 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014606 | Metagenome | 261 | Y |
| F016125 | Metagenome | 249 | N |
| F054669 | Metagenome | 139 | N |
| F100667 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334722_100734181 | F014606 | N/A | MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTVESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLNSVDYVIEPDEDKRFG |
| Ga0334722_100734182 | F100667 | AGG | MISIFSDTSKLEYALARLADAAKVDLGLVVKQEAAYVAKAIMQITPPTGDKTKKGATVATVTGGGITKTKASGLSTNAKKQGENAILGDLFGGRNMGKEKSIGLFQRIGNSTEVPPRGGQHETMGVNLGWEASKKIRIYRKFWVKSASIPQMKAFHYANRNERGRPRQVTRSLIGRWAVQDQMWVSNQAANRYLKYTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMTKAGNAQVHFGANPFVVARTTGNQIPDLQRVVDSALKIRYKITISKTRAILANRAVNLGFARVKGGMVIPKET |
| Ga0334722_100734183 | F016125 | AGG | MAAVRDFDPTQINSDFSAILAQAGISFTYQGVSVTGVWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASITYFIERVTLDAEGAGCEISVAKVI |
| Ga0334722_100734185 | F054669 | N/A | YRLADNPRKADGLQWAFHKYEKPAIRLTQKTLGDSTRSVSFREAWLATAAQPETVEHVFLVRPDDKETMAMSKQFLHDVGQPRATERAMISVHIEDGMVPPHDWDKLVIASGVTLIDAENIKEILAAKKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |