Scaffold Ga0334722_10018822

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10018822
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5967
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F016961	Metagenome / Metatranscriptome	243	N
F064717	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_100188221	F064717	GAG	MSLLQELGLTKESMAKMLGPVPAFKDPDPMVYRRWEAVPAKIRESILNDNPTCTYRELAKKYGISHSCVWNIKNKQPNKQ
Ga0334722_1001882210	F016961	AGGA	MHDPMNTALTIMGMAILLPFCVIAGIYVGHSLTIRSQQTKTNEQNNRSL
Ga0334722_100188224	F001259	AGGAGG	MKDSFAFVYVHAFNGIVRVESLETARNVDGNPEWKHVATINPHVVLEQILRAKGKERNLIIKHLLK
Ga0334722_100188225	F013755	AGGAGG	VSNHIGDTNKMVSDTPISDSTPHNVADLAMACRRFERFAAGRQAYIQQLETENDALRADLLLWNEKEVK