Basic Information | |
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Taxon OID | 3300033233 Open in IMG/M |
Scaffold ID | Ga0334722_10001740 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26210 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (46.94%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5107 | Long. (o) | -110.3566 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001018 | Metagenome / Metatranscriptome | 804 | Y |
F002333 | Metagenome | 569 | Y |
F002985 | Metagenome / Metatranscriptome | 515 | Y |
F003601 | Metagenome / Metatranscriptome | 477 | Y |
F075716 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334722_1000174015 | F002985 | N/A | MAYVIATYKDGLPYAVHACGQTNSFQLVALDSDVALNKIFSHPYRAGAYNILSWIEKNDDQLFSIDLDVYDEAKFRK |
Ga0334722_100017402 | F003601 | AGTAGG | MTEHTDEQLLAMAMANLGEYMHDNSPHYVLIEDPRNEDDFDTWDVGMEPIPGDQTWKSTAIDVESSKVND |
Ga0334722_1000174020 | F075716 | GAGG | MTTFNQFKFENTNNNSTLTLEVKADGCQEIVDEFISFMRGCGFMDVNIYSAMENAVEEHTSYQAHLGKSIELGMHDPIIKLGADVFNM |
Ga0334722_1000174024 | F002333 | N/A | MSYQTQTSLTATQASIYSRTNIRRAFSDFDDTDVAGIYLRDDSCVVAYHHGGELTYPREVIKTAFKAYTHRLKDFFAYLGPNYRGPSIWHNNAYVMFKGWNYNHALGNLTSNARLQAHWADKFIHLKDVNKVTTLLQSDQTDLGHLIAPDGLRLSDGEIDFDSDNEQEPNAGSSAPEPYCSCGSFQRQLANLSDFQMEITGYKPWCIHLTWFHKYRELLVKRADVRNEARGGAPMNCVAWWYAPPVDHNNNGRFVLLYTKHGSMAPLSHWRTYKPKEVFTQHDAWDLFFNMMDAGYVPFPGTSLPQLANAVKKQ |
Ga0334722_1000174026 | F001018 | N/A | MTQITQLKLKDLNILKLYEHYGALERSLPLLTPESQELAKAELEACIDIRSEKIDRIYYAMASHEDALSRIKQEGEMITQAKRHHESQIKQLKGLLNWLRRSAPLQTNRITGRNYEFVLVKKKDFTVEISSNLEDWDDVEQKQFCIQQEVTTTKQIVVRSMSGEILEERTDPKTTTEILPSLDAIRNAHQTGQHLPSGVKVFQEYSIRSKRIYRDKPMEFEASEYFGHVLPEVGATN |
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