Scaffold Ga0307510_10105466

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10105466
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016903	Metagenome	243	Y
F028665	Metagenome	190	Y
F028977	Metagenome	189	Y
F029295	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_101054661	F016903	N/A	MLKRSPAPSTLSTPSSLGLGDLYRTPVQTIIELEDELMEEGETTDPDLPMEEGQIADTRQLTPDSMDIGIPRVPSDWLQPDSP
Ga0307510_101054664	F028977	GAG	MVEIEGGGTVFLSEDSGDGDVLEFVIEVGPFVIESDHVLDAFFTFLLERCGGGGLGE
Ga0307510_101054665	F028665	GGA	MHSSRFFLSDVEEVVWGNESVIGVGFGLIVFDFFCGSEGVWVGDVEWNVFRFLGSAATVASSANGDNVEWCCRSGLVSRGMGCERESLVIDTGSEDRVIVVDWDHDGFVVDVNGIESFSWSPSSPVVCDVEVSTSDEGTEEVEIVVVGVHANENNSVVGAKGKDGRGGES
Ga0307510_101054666	F029295	AGG	MVEVANPELGSSWWIADMVVGDKGGRLRFQGFLYCLVDFQSPLVDPMHGDPRS