Scaffold Ga0307510

Basic Information
Taxon OID	3300033180 Open in IMG/M
Scaffold ID	Ga0307510_10064631 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3714
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3714

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.654	Long. (^o)	-122.839	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.654

Long. (^o)

-122.839

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016489	Metagenome	246	Y
F016903	Metagenome	243	Y
F028665	Metagenome	190	Y
F028977	Metagenome	189	Y
F029295	Metagenome	188	Y
F059500	Metagenome	133	Y
F075486	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_100646311	F059500	AGGAGG	MSVDFGHLTSSAAFDVFSYEDFHSGPPVVGCDKLEGFGNSGMSSGFVVVKKGCYSPPKVIVCHDNKCRSMVPVSAVQ
Ga0307510_1006463111	F016903	N/A	MLKRSPTPSTLSTPSSFGLDDLYRTPVQTIIELEDEQMEEGETTDSDSSMEEGQIADTRQSTPDSMDIGIPRVPSDWLQPDSP
Ga0307510_100646312	F075486	GAGG	VPVVLLSATEYTKVLFEGLIGTFAGSVCLRVIGRADVLVDVQDAA
Ga0307510_100646313	F016489	AGGGGG	LILYATLDIWETTSKGPYLLGDNLGVVLLGSRRFVPSNQTLDLIGNGEWRGRSLIQDSCALRCASWAAFLASSMAESRCSRDGMSVFLVGW
Ga0307510_100646314	F029295	AGG	MVEVANPELGSSWWIADMVVGDKEGRLRFQGFLYCLVDFQSPLVDPMHGDPRS
Ga0307510_100646315	F028665	GGA	LIHSSRFFLSDVEEVVWGDKSSFGVGFGLTVFDFFNGSEGVWVGDVEWNVFRFLGSAATVASSANGDNVEWCCGSGLVSRGMGCERESLVVDVGPEDRVIVVDWDHDCFMVDINGVKGFPWSPSSPVVCDVEVSTSDKCSEEVEIVVVGVHANENNPVVGTKGEDGRGGES
Ga0307510_100646316	F028977	GAG	VEMVEVEGGSAVFLSEDSCDGDVLEPIIEVDPFIIESDHVFDTFLTLLLERCGGGGLGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307510_10064631

Overview

Ecosystem & Geography

Associated Families

Sequences