NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10058399

Scaffold Ga0307510_10058399


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10058399 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3994
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011985Metagenome284Y
F065271Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0307510_100583992F065271N/AVAHHIQEVLQGPYNVLPRIKQPLPPTPRSHHTSISGNSDLVGATSQIYLPEVIYLGVTAPTRNHTELHIFKQHCLFLLQNRTEKHICHPLTELQTITPHIGAFNKFFWKYRTSITINGILEDYRGITHHSDTRTPCLVKVCTIFYSWDNPSYTVTLA
Ga0307510_100583993F011985N/AVANFREEILRQTYPRITNLQEQVQLTYWSEHHLVPQDLLDILPFGRLFSAQSFYRYINFQLVDLLNAARRCTTYWQLSGAHNFDQSPATQISLFYDETFLWHYFVPSHRPEIVTQIQAGHRIRFLSRFFVSETKVEVEFNEIRLQTNPSGEFTPVHLYQIVYSDERILTYHWNNRVWNTNLLTPPTTLIDPSSYYTLPITRPNTQGRDAEYLECFQRILLEPDLLSLDSSYHDSMDSTLPPTLVGTPQSSPPSTPELVYRRAQEITFSNDNPDLCFCGIDLCHCDSRHPGTPPTPLGIHLWDPRFFRAGPIEGLHYNRQSGQST
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