NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307510_10028990

Scaffold Ga0307510_10028990


Overview

Basic Information
Taxon OID3300033180 Open in IMG/M
Scaffold IDGa0307510_10028990 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6307
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.654Long. (o)-122.839Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028665Metagenome190Y
F044236Metagenome154Y
F059500Metagenome133Y
F075486Metagenome118Y
F096296Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307510_100289901F096296N/AHMDVDAAVTQEINATASGQQHSEAKKAELMRSNSCFYCEKQGHRANVCRKKQADRGNFSGRSNNSREPARANTTPIMPDISNLDTFSNYLKDNMDSFSEETRLGFVETLMPKDFPKAQN
Ga0307510_100289904F059500AGGGGGMSVDFGHLASSAAFDVFSYEDFHSGPPVVGCDKLEGFGNSGVSSGFVVVKKGCYSPPKVIVCHDNKCRSMVPVSAVQ
Ga0307510_100289905F044236N/AMKTDAFEQSVSVMVRIVLYPPESGSLVMKSIATVSKGRAFSAGVIGNIGG
Ga0307510_100289906F075486GAGGVPVVLLSATEHTKVLFEGLIGTFAGSICLRVIGRADVLVDVQDAA
Ga0307510_100289908F028665GAGMSLMHSSRFFLSDVEEVVWGNESGVGVGFGLIAFNFLCGGKGVWVGDVEWNVFRFLGSAATVASSANGDNVEWSCGSGLVSRGMGCEWESLVVDVGPEDRVIVVDWDHDGFVVDVNGVKGFSWSPSSPVVRDVEVSTSDECSKEVEIIVVGVHANENNPVIGAKGEDGRGGES
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