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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033180 Open in IMG/M |
| Scaffold ID | Ga0307510_10022627 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7294 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (56.25%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Atheliales → Atheliaceae → Piloderma → Piloderma croceum → Piloderma croceum F 1598 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 45.654 | Long. (o) | -122.839 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016903 | Metagenome | 243 | Y |
| F028665 | Metagenome | 190 | Y |
| F029295 | Metagenome | 188 | Y |
| F044236 | Metagenome | 154 | Y |
| F059500 | Metagenome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307510_1002262712 | F028665 | GAG | MSLIQSSRFFLSDVEEVVWGDKSSFGVGFGLIVFDFFSGSEGVWVGDVEWNVFRFLGSAATVASSANGDNVEWCCGSGLVSRGMGCERESLIIDMGPEDRVIIVDWDHDGFVVDVNGVESFSWSPSSPVVRDVEVSTLDEGTEEVEIVVVGVHANENNSVVGAKGKDGRGGES |
| Ga0307510_1002262713 | F029295 | AGG | MVEVANPELGSSWWIADMAVGDKGGRLRFQGFLYCLVDFQSPLVGPMHGDPQS |
| Ga0307510_1002262714 | F044236 | N/A | MKTDAFEQSVSVMVRIVSYPPESGSLVMKSMATVSKGRAFSVGVIGNIGG |
| Ga0307510_1002262715 | F059500 | AGGGGG | MSVDFGHLASSAAFNVLSYKDFHSGPPVVGCNKLEGFGNSGVSGGFVVVKKGCYSPPKVIVCHDNKCRSMVPVSAVQ |
| Ga0307510_100226278 | F016903 | N/A | MLSTPSSFGLGDLYRTPVQTIIELEDELMEEGETTDPDSPMEEGQIADIRQSTPDSMDIGIPRVPSDWLQPDSP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |